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Page 1
An integrated view of the structure and function of the human 4D nucleome.
4D Nucleome Consortium; Dekker J, Oksuz BA, Zhang Y, Wang Y, Minsk MK, Kuang S, Yang L, Gibcus JH, Krietenstein N, Rando OJ, Xu J, Janssens DH, Henikoff S, Kukalev A, Willemin A, Winick-Ng W, Kempfer R, Pombo A, Yu M, Kumar P, Zhang L, Belmont AS, Sasaki T, van Schaik T, Brueckner L, Peric-Hupkes D, van Steensel B, Wang P, Chai H, Kim M, Ruan Y, Zhang R, Quinodoz SA, Bhat P, Guttman M, Zhao W, Chien S, Liu Y, Venev SV, Plewczynski D, Azcarate II, Szabó D, Thieme CJ, Szczepińska T, Chiliński M, Sengupta K, Conte M, Esposito A, Abraham A, Zhang R, Wang Y, Wen X, Wu Q, Yang Y, Liu J, Boninsegna L, Yildirim A, Zhan Y, Chiariello AM, Bianco S, Lee L, Hu M, Li Y, Barnett RJ, Cook AL, Emerson DJ, Marchal C, Zhao P, Park P, Alver BH, Schroeder A, Navelkar R, Bakker C, Ronchetti W, Ehmsen S, Veit A, Gehlenborg N, Wang T, Li D, Wang X, Nicodemi M, Ren B, Zhong S, Phillips-Cremins JE, Gilbert DM, Pollard KS, Alber F, Ma J, Noble WS, Yue F. 4D Nucleome Consortium, et al. Among authors: nicodemi m. bioRxiv [Preprint]. 2024 Oct 27:2024.09.17.613111. doi: 10.1101/2024.09.17.613111. bioRxiv. 2024. PMID: 39484446 Free PMC article. Preprint.
Polymer physics models reveal structural folding features of single-molecule gene chromatin conformations.
Conte M, Abraham A, Esposito A, Yang L, Gibcus JH, Parsi KM, Vercellone F, Fontana A, Pierno FD, Dekker J, Nicodemi M. Conte M, et al. Among authors: nicodemi m. bioRxiv [Preprint]. 2024 Jul 16:2024.07.16.603769. doi: 10.1101/2024.07.16.603769. bioRxiv. 2024. Update in: Int J Mol Sci. 2024 Sep 23;25(18):10215. doi: 10.3390/ijms251810215 PMID: 39071404 Free PMC article. Updated. Preprint.
A Multiscale Perspective on Chromatin Architecture through Polymer Physics.
Vercellone F, Chiariello AM, Esposito A, Conte M, Abraham A, Fontana A, Di Pierno F, Tafuri F, Guha S, Kundu S, Di Carluccio C, Nicodemi M, Bianco S. Vercellone F, et al. Among authors: nicodemi m. Physiology (Bethesda). 2024 Nov 27. doi: 10.1152/physiol.00050.2024. Online ahead of print. Physiology (Bethesda). 2024. PMID: 39601793 Review.
A single dose of cocaine rewires the 3D genome structure of midbrain dopamine neurons.
Szabó D, Franke V, Bianco S, Batiuk MY, Paul EJ, Kukalev A, Pfisterer UG, Irastorza-Azcarate I, Chiariello AM, Demharter S, Zea-Redondo L, Lopez-Atalaya JP, Nicodemi M, Akalin A, Khodosevich K, Ungless MA, Winick-Ng W, Pombo A. Szabó D, et al. Among authors: nicodemi m. bioRxiv [Preprint]. 2024 May 12:2024.05.10.593308. doi: 10.1101/2024.05.10.593308. bioRxiv. 2024. PMID: 38766140 Free PMC article. Preprint.
Extensive folding variability between homologous chromosomes in mammalian cells.
Irastorza-Azcarate I, Kukalev A, Kempfer R, Thieme CJ, Mastrobuoni G, Markowski J, Loof G, Sparks TM, Brookes E, Natarajan KN, Sauer S, Fisher AG, Nicodemi M, Ren B, Schwarz RF, Kempa S, Pombo A. Irastorza-Azcarate I, et al. Among authors: nicodemi m. bioRxiv [Preprint]. 2024 May 10:2024.05.08.591087. doi: 10.1101/2024.05.08.591087. bioRxiv. 2024. PMID: 38766012 Free PMC article. Preprint.
RNA-mediated symmetry breaking enables singular olfactory receptor choice.
Pourmorady AD, Bashkirova EV, Chiariello AM, Belagzhal H, Kodra A, Duffié R, Kahiapo J, Monahan K, Pulupa J, Schieren I, Osterhoudt A, Dekker J, Nicodemi M, Lomvardas S. Pourmorady AD, et al. Among authors: nicodemi m. Nature. 2024 Jan;625(7993):181-188. doi: 10.1038/s41586-023-06845-4. Epub 2023 Dec 20. Nature. 2024. PMID: 38123679 Free PMC article.
109 results