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Page 1
An integrated view of the structure and function of the human 4D nucleome.
4D Nucleome Consortium; Dekker J, Oksuz BA, Zhang Y, Wang Y, Minsk MK, Kuang S, Yang L, Gibcus JH, Krietenstein N, Rando OJ, Xu J, Janssens DH, Henikoff S, Kukalev A, Willemin A, Winick-Ng W, Kempfer R, Pombo A, Yu M, Kumar P, Zhang L, Belmont AS, Sasaki T, van Schaik T, Brueckner L, Peric-Hupkes D, van Steensel B, Wang P, Chai H, Kim M, Ruan Y, Zhang R, Quinodoz SA, Bhat P, Guttman M, Zhao W, Chien S, Liu Y, Venev SV, Plewczynski D, Azcarate II, Szabó D, Thieme CJ, Szczepińska T, Chiliński M, Sengupta K, Conte M, Esposito A, Abraham A, Zhang R, Wang Y, Wen X, Wu Q, Yang Y, Liu J, Boninsegna L, Yildirim A, Zhan Y, Chiariello AM, Bianco S, Lee L, Hu M, Li Y, Barnett RJ, Cook AL, Emerson DJ, Marchal C, Zhao P, Park P, Alver BH, Schroeder A, Navelkar R, Bakker C, Ronchetti W, Ehmsen S, Veit A, Gehlenborg N, Wang T, Li D, Wang X, Nicodemi M, Ren B, Zhong S, Phillips-Cremins JE, Gilbert DM, Pollard KS, Alber F, Ma J, Noble WS, Yue F. 4D Nucleome Consortium, et al. Among authors: noble ws. bioRxiv [Preprint]. 2024 Oct 27:2024.09.17.613111. doi: 10.1101/2024.09.17.613111. bioRxiv. 2024. PMID: 39484446 Free PMC article. Preprint.
Author Correction: Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days.
Nunn BL, Timmins-Schiffman E, Mudge MC, Plubell DL, Chebli G, Kubanek J, Riffle M, Noble WS, Harvey E, Nunn TA, Rynearson T, Huntemann M, LaButti K, Foster B, Foster B, Roux S, Palaniappan K, Mukherjee S, Reddy TBK, Daum C, Copeland A, Chen IA, Ivanova NN, Kyrpides NC, Glavina Del Rio T, Eloe-Fadrosh EA. Nunn BL, et al. Among authors: noble ws. Sci Data. 2025 Jan 20;12(1):113. doi: 10.1038/s41597-025-04445-7. Sci Data. 2025. PMID: 39833183 Free PMC article. No abstract available.
Massively parallel characterization of transcriptional regulatory elements.
Agarwal V, Inoue F, Schubach M, Penzar D, Martin BK, Dash PM, Keukeleire P, Zhang Z, Sohota A, Zhao J, Georgakopoulos-Soares I, Noble WS, Yardımcı GG, Kulakovskiy IV, Kircher M, Shendure J, Ahituv N. Agarwal V, et al. Among authors: noble ws. Nature. 2025 Jan 15. doi: 10.1038/s41586-024-08430-9. Online ahead of print. Nature. 2025. PMID: 39814889
Author Correction: ChromaFold predicts the 3D contact map from single-cell chromatin accessibility.
Gao VR, Yang R, Das A, Luo R, Luo H, McNally DR, Karagiannidis I, Rivas MA, Wang ZM, Barisic D, Karbalayghareh A, Wong W, Zhan YA, Chin CR, Noble WS, Bilmes JA, Apostolou E, Kharas MG, Béguelin W, Viny AD, Huangfu D, Rudensky AY, Melnick AM, Leslie CS. Gao VR, et al. Among authors: noble ws. Nat Commun. 2025 Jan 15;16(1):684. doi: 10.1038/s41467-025-56017-3. Nat Commun. 2025. PMID: 39814735 Free PMC article. No abstract available.
A BLAST from the past: revisiting blastp's E-value.
Lu YY, Noble WS, Keich U. Lu YY, et al. Among authors: noble ws. Bioinformatics. 2024 Nov 28;40(12):btae729. doi: 10.1093/bioinformatics/btae729. Bioinformatics. 2024. PMID: 39656790 Free PMC article.
Deep Learning Methods for De Novo Peptide Sequencing.
Bittremieux W, Ananth V, Fondrie WE, Melendez C, Pominova M, Sanders J, Wen B, Yilmaz M, Noble WS. Bittremieux W, et al. Among authors: noble ws. Mass Spectrom Rev. 2024 Nov 29. doi: 10.1002/mas.21919. Online ahead of print. Mass Spectrom Rev. 2024. PMID: 39611290 Review.
Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days.
Nunn BL, Timmins-Schiffman E, Mudge MC, Plubell DL, Chebli G, Kubanek J, Riffle M, Noble WS, Harvey E, Nunn TA, Rynearson T, Huntemann M, LaButti K, Foster B, Foster B, Roux S, Palaniappan K, Mukherjee S, Reddy TBK, Daum C, Copeland A, Chen IA, Ivanova NN, Kyrpides NC, Glavina Del Rio T, Eloe-Fadrosh EA. Nunn BL, et al. Among authors: noble ws. Sci Data. 2024 Nov 22;11(1):1270. doi: 10.1038/s41597-024-04013-5. Sci Data. 2024. PMID: 39578464 Free PMC article.
326 results