Aksimentiev A - Search Results

1

Atomic view of photosynthetic metabolite permeability pathways and confinement in synthetic carboxysome shells.

Sarkar D, Maffeo C, Sutter M, Aksimentiev A, Kerfeld CA, Vermaas JV. Sarkar D, et al. Among authors: aksimentiev a. Proc Natl Acad Sci U S A. 2024 Nov 5;121(45):e2402277121. doi: 10.1073/pnas.2402277121. Epub 2024 Nov 1. Proc Natl Acad Sci U S A. 2024. PMID: 39485798

2

Structure, dynamics, and ion conductance of the phospholamban pentamer.

Maffeo C, Aksimentiev A. Maffeo C, et al. Among authors: aksimentiev a. Biophys J. 2009 Jun 17;96(12):4853-65. doi: 10.1016/j.bpj.2009.03.053. Biophys J. 2009. PMID: 19527644 Free PMC article.

3

Single molecule force measurements: insights from molecular simulations. Comment on "Biophysical characterization of DNA binding from single molecule force measurements" by Kathy R. Chaurasiya et al.

Maffeo C, Aksimentiev A. Maffeo C, et al. Among authors: aksimentiev a. Phys Life Rev. 2010 Sep;7(3):353-4; discussion 358-61. doi: 10.1016/j.plrev.2010.07.004. Epub 2010 Jul 22. Phys Life Rev. 2010. PMID: 20673653 No abstract available.

4

DNA-DNA interactions in tight supercoils are described by a small effective charge density.

Maffeo C, Schöpflin R, Brutzer H, Stehr R, Aksimentiev A, Wedemann G, Seidel R. Maffeo C, et al. Among authors: aksimentiev a. Phys Rev Lett. 2010 Oct 8;105(15):158101. doi: 10.1103/PhysRevLett.105.158101. Epub 2010 Oct 4. Phys Rev Lett. 2010. PMID: 21230940 Free PMC article.

5

End-to-end attraction of duplex DNA.

Maffeo C, Luan B, Aksimentiev A. Maffeo C, et al. Among authors: aksimentiev a. Nucleic Acids Res. 2012 May;40(9):3812-21. doi: 10.1093/nar/gkr1220. Epub 2012 Jan 12. Nucleic Acids Res. 2012. PMID: 22241779 Free PMC article.

6

Optimization of the molecular dynamics method for simulations of DNA and ion transport through biological nanopores.

Wells DB, Bhattacharya S, Carr R, Maffeo C, Ho A, Comer J, Aksimentiev A. Wells DB, et al. Among authors: aksimentiev a. Methods Mol Biol. 2012;870:165-86. doi: 10.1007/978-1-61779-773-6_10. Methods Mol Biol. 2012. PMID: 22528264

7

Modeling and simulation of ion channels.

Maffeo C, Bhattacharya S, Yoo J, Wells D, Aksimentiev A. Maffeo C, et al. Among authors: aksimentiev a. Chem Rev. 2012 Dec 12;112(12):6250-84. doi: 10.1021/cr3002609. Epub 2012 Oct 4. Chem Rev. 2012. PMID: 23035940 Free PMC article. Review. No abstract available.

8

Stretching and controlled motion of single-stranded DNA in locally heated solid-state nanopores.

Belkin M, Maffeo C, Wells DB, Aksimentiev A. Belkin M, et al. Among authors: aksimentiev a. ACS Nano. 2013 Aug 27;7(8):6816-24. doi: 10.1021/nn403575n. Epub 2013 Jul 26. ACS Nano. 2013. PMID: 23876013 Free PMC article.

9

In situ structure and dynamics of DNA origami determined through molecular dynamics simulations.

Yoo J, Aksimentiev A. Yoo J, et al. Among authors: aksimentiev a. Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):20099-104. doi: 10.1073/pnas.1316521110. Epub 2013 Nov 25. Proc Natl Acad Sci U S A. 2013. PMID: 24277840 Free PMC article.

10

A Coarse-Grained Model of Unstructured Single-Stranded DNA Derived from Atomistic Simulation and Single-Molecule Experiment.

Maffeo C, Ngo TT, Ha T, Aksimentiev A. Maffeo C, et al. Among authors: aksimentiev a. J Chem Theory Comput. 2014 Aug 12;10(8):2891-2896. doi: 10.1021/ct500193u. Epub 2014 Jun 3. J Chem Theory Comput. 2014. PMID: 25136266 Free PMC article.

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