Maffeo C - Search Results

1

Atomic view of photosynthetic metabolite permeability pathways and confinement in synthetic carboxysome shells.

Sarkar D, Maffeo C, Sutter M, Aksimentiev A, Kerfeld CA, Vermaas JV. Sarkar D, et al. Among authors: maffeo c. Proc Natl Acad Sci U S A. 2024 Nov 5;121(45):e2402277121. doi: 10.1073/pnas.2402277121. Epub 2024 Nov 1. Proc Natl Acad Sci U S A. 2024. PMID: 39485798

2

Single molecule force measurements: insights from molecular simulations. Comment on "Biophysical characterization of DNA binding from single molecule force measurements" by Kathy R. Chaurasiya et al.

Maffeo C, Aksimentiev A. Maffeo C, et al. Phys Life Rev. 2010 Sep;7(3):353-4; discussion 358-61. doi: 10.1016/j.plrev.2010.07.004. Epub 2010 Jul 22. Phys Life Rev. 2010. PMID: 20673653 No abstract available.

3

End-to-end attraction of duplex DNA.

Maffeo C, Luan B, Aksimentiev A. Maffeo C, et al. Nucleic Acids Res. 2012 May;40(9):3812-21. doi: 10.1093/nar/gkr1220. Epub 2012 Jan 12. Nucleic Acids Res. 2012. PMID: 22241779 Free PMC article.

4

De novo reconstruction of DNA origami structures through atomistic molecular dynamics simulation.

Maffeo C, Yoo J, Aksimentiev A. Maffeo C, et al. Nucleic Acids Res. 2016 Apr 20;44(7):3013-9. doi: 10.1093/nar/gkw155. Epub 2016 Mar 14. Nucleic Acids Res. 2016. PMID: 26980283 Free PMC article.

5

Inchworm movement of two rings switching onto a thread by biased Brownian diffusion represent a three-body problem.

Benson CR, Maffeo C, Fatila EM, Liu Y, Sheetz EG, Aksimentiev A, Singharoy A, Flood AH. Benson CR, et al. Among authors: maffeo c. Proc Natl Acad Sci U S A. 2018 Sep 18;115(38):9391-9396. doi: 10.1073/pnas.1719539115. Epub 2018 May 7. Proc Natl Acad Sci U S A. 2018. PMID: 29735677 Free PMC article.

6

MrDNA: a multi-resolution model for predicting the structure and dynamics of DNA systems.

Maffeo C, Aksimentiev A. Maffeo C, et al. Nucleic Acids Res. 2020 May 21;48(9):5135-5146. doi: 10.1093/nar/gkaa200. Nucleic Acids Res. 2020. PMID: 32232413 Free PMC article.

7

Multi-resolution simulation of DNA transport through large synthetic nanostructures.

Choudhary A, Maffeo C, Aksimentiev A. Choudhary A, et al. Among authors: maffeo c. Phys Chem Chem Phys. 2022 Feb 2;24(5):2706-2716. doi: 10.1039/d1cp04589j. Phys Chem Chem Phys. 2022. PMID: 35050282 Free PMC article. Review.

8

Structure, dynamics, and ion conductance of the phospholamban pentamer.

Maffeo C, Aksimentiev A. Maffeo C, et al. Biophys J. 2009 Jun 17;96(12):4853-65. doi: 10.1016/j.bpj.2009.03.053. Biophys J. 2009. PMID: 19527644 Free PMC article.

9

Molecular mechanism of DNA association with single-stranded DNA binding protein.

Maffeo C, Aksimentiev A. Maffeo C, et al. Nucleic Acids Res. 2017 Dec 1;45(21):12125-12139. doi: 10.1093/nar/gkx917. Nucleic Acids Res. 2017. PMID: 29059392 Free PMC article.

10

A Practical Guide to Molecular Dynamics Simulations of DNA Origami Systems.

Yoo J, Li CY, Slone SM, Maffeo C, Aksimentiev A. Yoo J, et al. Among authors: maffeo c. Methods Mol Biol. 2018;1811:209-229. doi: 10.1007/978-1-4939-8582-1_15. Methods Mol Biol. 2018. PMID: 29926456

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