Simpson MJ - Search Results

1

Likelihood-based inference, identifiability, and prediction using count data from lattice-based random walk models.

Liu Y, Warne DJ, Simpson MJ. Liu Y, et al. Among authors: simpson mj. Phys Rev E. 2024 Oct;110(4-1):044405. doi: 10.1103/PhysRevE.110.044405. Phys Rev E. 2024. PMID: 39562876

2

Optimal Quantification of Contact Inhibition in Cell Populations.

Warne DJ, Baker RE, Simpson MJ. Warne DJ, et al. Among authors: simpson mj. Biophys J. 2017 Nov 7;113(9):1920-1924. doi: 10.1016/j.bpj.2017.09.016. Epub 2017 Oct 13. Biophys J. 2017. PMID: 29032961 Free PMC article.

3

Using Experimental Data and Information Criteria to Guide Model Selection for Reaction-Diffusion Problems in Mathematical Biology.

Warne DJ, Baker RE, Simpson MJ. Warne DJ, et al. Among authors: simpson mj. Bull Math Biol. 2019 Jun;81(6):1760-1804. doi: 10.1007/s11538-019-00589-x. Epub 2019 Feb 27. Bull Math Biol. 2019. PMID: 30815837

4

Simulation and inference algorithms for stochastic biochemical reaction networks: from basic concepts to state-of-the-art.

Warne DJ, Baker RE, Simpson MJ. Warne DJ, et al. Among authors: simpson mj. J R Soc Interface. 2019 Feb 28;16(151):20180943. doi: 10.1098/rsif.2018.0943. J R Soc Interface. 2019. PMID: 30958205 Free PMC article.

5

A practical guide to pseudo-marginal methods for computational inference in systems biology.

Warne DJ, Baker RE, Simpson MJ. Warne DJ, et al. Among authors: simpson mj. J Theor Biol. 2020 Jul 7;496:110255. doi: 10.1016/j.jtbi.2020.110255. Epub 2020 Mar 26. J Theor Biol. 2020. PMID: 32223995 Review.

6

Identifiability analysis for stochastic differential equation models in systems biology.

Browning AP, Warne DJ, Burrage K, Baker RE, Simpson MJ. Browning AP, et al. Among authors: simpson mj. J R Soc Interface. 2020 Dec;17(173):20200652. doi: 10.1098/rsif.2020.0652. Epub 2020 Dec 16. J R Soc Interface. 2020. PMID: 33323054 Free PMC article.

7

Parameter identifiability and model selection for sigmoid population growth models.

Simpson MJ, Browning AP, Warne DJ, Maclaren OJ, Baker RE. Simpson MJ, et al. J Theor Biol. 2022 Feb 21;535:110998. doi: 10.1016/j.jtbi.2021.110998. Epub 2021 Dec 29. J Theor Biol. 2022. PMID: 34973274

8

Computationally efficient framework for diagnosing, understanding and predicting biphasic population growth.

Murphy RJ, Maclaren OJ, Calabrese AR, Thomas PB, Warne DJ, Williams ED, Simpson MJ. Murphy RJ, et al. Among authors: simpson mj. J R Soc Interface. 2022 Dec;19(197):20220560. doi: 10.1098/rsif.2022.0560. Epub 2022 Dec 7. J R Soc Interface. 2022. PMID: 36475389 Free PMC article.

9

Calculating the Fickian diffusivity for a lattice-based random walk with agents and obstacles of different shapes and sizes.

Ellery AJ, Baker RE, Simpson MJ. Ellery AJ, et al. Among authors: simpson mj. Phys Biol. 2015 Nov 24;12(6):066010. doi: 10.1088/1478-3975/12/6/066010. Phys Biol. 2015. PMID: 26599468

10

An analytical method for disentangling the roles of adhesion and crowding for random walk models on a crowded lattice.

Ellery AJ, Baker RE, Simpson MJ. Ellery AJ, et al. Among authors: simpson mj. Phys Biol. 2016 Sep 6;13(5):05LT02. doi: 10.1088/1478-3975/13/5/05LT02. Phys Biol. 2016. PMID: 27597573

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