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Considerations in the search for epistasis.
Balvert M, Cooper-Knock J, Stamp J, Byrne RP, Mourragui S, van Gils J, Benonisdottir S, Schlüter J, Kenna K, Abeln S, Iacoangeli A, Daub JT, Browning BL, Taş G, Hu J, Wang Y, Alhathli E, Harvey C, Pianesi L, Schulte SC, González-Domínguez J, Garrisson E; Lorentz workshop on epistasis; Snyder MP, Schönhuth A, Sng LMF, Twine NA. Balvert M, et al. Among authors: schonhuth a. Genome Biol. 2024 Nov 19;25(1):296. doi: 10.1186/s13059-024-03427-z. Genome Biol. 2024. PMID: 39563431 Free PMC article. Review.
HyLight: Strain aware assembly of low coverage metagenomes.
Kang X, Zhang W, Li Y, Luo X, Schönhuth A. Kang X, et al. Among authors: schonhuth a. Nat Commun. 2024 Oct 7;15(1):8665. doi: 10.1038/s41467-024-52907-0. Nat Commun. 2024. PMID: 39375348 Free PMC article.
Computing linkage disequilibrium aware genome embeddings using autoencoders.
Taş G, Westerdijk T, Postma E; Project MinE ALS GWAS Consortium; Veldink JH, Schönhuth A, Balvert M. Taş G, et al. Among authors: schonhuth a. Bioinformatics. 2024 Jun 3;40(6):btae326. doi: 10.1093/bioinformatics/btae326. Bioinformatics. 2024. PMID: 38775680 Free PMC article.
Enhancing Long-Read-Based Strain-Aware Metagenome Assembly.
Luo X, Kang X, Schönhuth A. Luo X, et al. Among authors: schonhuth a. Front Genet. 2022 May 13;13:868280. doi: 10.3389/fgene.2022.868280. eCollection 2022. Front Genet. 2022. PMID: 35646097 Free PMC article.
59 results