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Optimized Whole-Slide-Image H&E Stain Normalization: A Step Towards Big Data Integration in Digital Pathology.
Agraz JL, Agraz C, Chen AA, Rice C, Pozos RS, Aelterman S, Tan A, Viaene AN, Nasrallah MP, Sharma P, Grenko CM, Kurc T, Saltz J, Feldman MD, Akbari H, Shinohara RT, Bakas S, Wilson P. Agraz JL, et al. Among authors: kurc t. IEEE Open J Eng Med Biol. 2024 Sep 6;6:35-40. doi: 10.1109/OJEMB.2024.3455011. eCollection 2025. IEEE Open J Eng Med Biol. 2024. PMID: 39564562 Free PMC article.
Uncertainty Estimation for Tumor Prediction with Unlabeled Data.
Yun J, Abousamra S, Li C, Gupta R, Kurc T, Samaras D, Van Dyke A, Saltz J, Chen C. Yun J, et al. Among authors: kurc t. Conf Comput Vis Pattern Recognit Workshops. 2024 Jun;2024:6946-6954. doi: 10.1109/cvprw63382.2024.00688. Epub 2024 Sep 27. Conf Comput Vis Pattern Recognit Workshops. 2024. PMID: 39553831 Free PMC article.
PathLDM: Text conditioned Latent Diffusion Model for Histopathology.
Yellapragada S, Graikos A, Prasanna P, Kurc T, Saltz J, Samaras D. Yellapragada S, et al. Among authors: kurc t. IEEE Winter Conf Appl Comput Vis. 2024 Jan;2024:5170-5179. doi: 10.1109/wacv57701.2024.00510. Epub 2024 Apr 9. IEEE Winter Conf Appl Comput Vis. 2024. PMID: 38808304 Free PMC article.
Topology-Guided Multi-Class Cell Context Generation for Digital Pathology.
Abousamra S, Gupta R, Kurc T, Samaras D, Saltz J, Chen C. Abousamra S, et al. Among authors: kurc t. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2023 Jun;2023:3323-3333. doi: 10.1109/cvpr52729.2023.00324. Epub 2023 Aug 22. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2023. PMID: 38741683 Free PMC article.
Keratin 17 modulates the immune topography of pancreatic cancer.
Delgado-Coka L, Horowitz M, Torrente-Goncalves M, Roa-Peña L, Leiton CV, Hasan M, Babu S, Fassler D, Oentoro J, Bai JK, Petricoin EF 3rd, Matrisian LM, Blais EM, Marchenko N, Allard FD, Jiang W, Larson B, Hendifar A, Chen C, Abousamra S, Samaras D, Kurc T, Saltz J, Escobar-Hoyos LF, Shroyer KR. Delgado-Coka L, et al. Among authors: kurc t. J Transl Med. 2024 May 10;22(1):443. doi: 10.1186/s12967-024-05252-1. J Transl Med. 2024. PMID: 38730319 Free PMC article.
Keratin 17 modulates the immune topography of pancreatic cancer.
Delgado-Coka LA, Horowitz M, Torrente-Goncalves M, Roa-Peña L, Leiton CV, Hasan M, Babu S, Fassler D, Oentoro J, Karen Bai JD, Petricoin EF, Matrisian LM, Blais EM, Marchenko N, Allard FD, Jiang W, Larson B, Hendifar A, Chen C, Abousamra S, Samaras D, Kurc T, Saltz J, Escobar-Hoyos LF, Shroyer K. Delgado-Coka LA, et al. Among authors: kurc t. Res Sq [Preprint]. 2024 Feb 20:rs.3.rs-3886691. doi: 10.21203/rs.3.rs-3886691/v1. Res Sq. 2024. Update in: J Transl Med. 2024 May 10;22(1):443. doi: 10.1186/s12967-024-05252-1 PMID: 38464123 Free PMC article. Updated. Preprint.
Metrics reloaded: recommendations for image analysis validation.
Maier-Hein L, Reinke A, Godau P, Tizabi MD, Buettner F, Christodoulou E, Glocker B, Isensee F, Kleesiek J, Kozubek M, Reyes M, Riegler MA, Wiesenfarth M, Kavur AE, Sudre CH, Baumgartner M, Eisenmann M, Heckmann-Nötzel D, Rädsch T, Acion L, Antonelli M, Arbel T, Bakas S, Benis A, Blaschko MB, Cardoso MJ, Cheplygina V, Cimini BA, Collins GS, Farahani K, Ferrer L, Galdran A, van Ginneken B, Haase R, Hashimoto DA, Hoffman MM, Huisman M, Jannin P, Kahn CE, Kainmueller D, Kainz B, Karargyris A, Karthikesalingam A, Kofler F, Kopp-Schneider A, Kreshuk A, Kurc T, Landman BA, Litjens G, Madani A, Maier-Hein K, Martel AL, Mattson P, Meijering E, Menze B, Moons KGM, Müller H, Nichyporuk B, Nickel F, Petersen J, Rajpoot N, Rieke N, Saez-Rodriguez J, Sánchez CI, Shetty S, van Smeden M, Summers RM, Taha AA, Tiulpin A, Tsaftaris SA, Van Calster B, Varoquaux G, Jäger PF. Maier-Hein L, et al. Among authors: kurc t. Nat Methods. 2024 Feb;21(2):195-212. doi: 10.1038/s41592-023-02151-z. Epub 2024 Feb 12. Nat Methods. 2024. PMID: 38347141 Free PMC article. Review.
Understanding metric-related pitfalls in image analysis validation.
Reinke A, Tizabi MD, Baumgartner M, Eisenmann M, Heckmann-Nötzel D, Kavur AE, Rädsch T, Sudre CH, Acion L, Antonelli M, Arbel T, Bakas S, Benis A, Buettner F, Cardoso MJ, Cheplygina V, Chen J, Christodoulou E, Cimini BA, Farahani K, Ferrer L, Galdran A, van Ginneken B, Glocker B, Godau P, Hashimoto DA, Hoffman MM, Huisman M, Isensee F, Jannin P, Kahn CE, Kainmueller D, Kainz B, Karargyris A, Kleesiek J, Kofler F, Kooi T, Kopp-Schneider A, Kozubek M, Kreshuk A, Kurc T, Landman BA, Litjens G, Madani A, Maier-Hein K, Martel AL, Meijering E, Menze B, Moons KGM, Müller H, Nichyporuk B, Nickel F, Petersen J, Rafelski SM, Rajpoot N, Reyes M, Riegler MA, Rieke N, Saez-Rodriguez J, Sánchez CI, Shetty S, Summers RM, Taha AA, Tiulpin A, Tsaftaris SA, Van Calster B, Varoquaux G, Yaniv ZR, Jäger PF, Maier-Hein L. Reinke A, et al. Among authors: kurc t. Nat Methods. 2024 Feb;21(2):182-194. doi: 10.1038/s41592-023-02150-0. Epub 2024 Feb 12. Nat Methods. 2024. PMID: 38347140 Free PMC article. Review.
An Intelligent Search & Retrieval System (IRIS) and Clinical and Research Repository for Decision Support Based on Machine Learning and Joint Kernel-based Supervised Hashing.
Foran DJ, Chen W, Kurc T, Gupta R, Kaczmarzyk JR, Torre-Healy LA, Bremer E, Ajjarapu S, Do N, Harris G, Stroup A, Durbin E, Saltz JH. Foran DJ, et al. Among authors: kurc t. Cancer Inform. 2024 Feb 4;23:11769351231223806. doi: 10.1177/11769351231223806. eCollection 2024. Cancer Inform. 2024. PMID: 38322427 Free PMC article.
121 results