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Optimized Whole-Slide-Image H&E Stain Normalization: A Step Towards Big Data Integration in Digital Pathology.
Agraz JL, Agraz C, Chen AA, Rice C, Pozos RS, Aelterman S, Tan A, Viaene AN, Nasrallah MP, Sharma P, Grenko CM, Kurc T, Saltz J, Feldman MD, Akbari H, Shinohara RT, Bakas S, Wilson P. Agraz JL, et al. Among authors: shinohara rt. IEEE Open J Eng Med Biol. 2024 Sep 6;6:35-40. doi: 10.1109/OJEMB.2024.3455011. eCollection 2025. IEEE Open J Eng Med Biol. 2024. PMID: 39564562 Free PMC article.
Cancer imaging phenomics toolkit: quantitative imaging analytics for precision diagnostics and predictive modeling of clinical outcome.
Davatzikos C, Rathore S, Bakas S, Pati S, Bergman M, Kalarot R, Sridharan P, Gastounioti A, Jahani N, Cohen E, Akbari H, Tunc B, Doshi J, Parker D, Hsieh M, Sotiras A, Li H, Ou Y, Doot RK, Bilello M, Fan Y, Shinohara RT, Yushkevich P, Verma R, Kontos D. Davatzikos C, et al. Among authors: shinohara rt. J Med Imaging (Bellingham). 2018 Jan;5(1):011018. doi: 10.1117/1.JMI.5.1.011018. Epub 2018 Jan 11. J Med Imaging (Bellingham). 2018. PMID: 29340286 Free PMC article.
Overall survival prediction in glioblastoma patients using structural magnetic resonance imaging (MRI): advanced radiomic features may compensate for lack of advanced MRI modalities.
Bakas S, Shukla G, Akbari H, Erus G, Sotiras A, Rathore S, Sako C, Min Ha S, Rozycki M, Shinohara RT, Bilello M, Davatzikos C. Bakas S, et al. Among authors: shinohara rt. J Med Imaging (Bellingham). 2020 May;7(3):031505. doi: 10.1117/1.JMI.7.3.031505. Epub 2020 Jun 9. J Med Imaging (Bellingham). 2020. PMID: 32566694 Free PMC article.
The Cancer Imaging Phenomics Toolkit (CaPTk): Technical Overview.
Pati S, Singh A, Rathore S, Gastounioti A, Bergman M, Ngo P, Ha SM, Bounias D, Minock J, Murphy G, Li H, Bhattarai A, Wolf A, Sridaran P, Kalarot R, Akbari H, Sotiras A, Thakur SP, Verma R, Shinohara RT, Yushkevich P, Fan Y, Kontos D, Davatzikos C, Bakas S. Pati S, et al. Among authors: shinohara rt. Brainlesion. 2020;11993:380-394. doi: 10.1007/978-3-030-46643-5_38. Epub 2020 May 19. Brainlesion. 2020. PMID: 32754723 Free PMC article.
Reproducibility analysis of multi-institutional paired expert annotations and radiomic features of the Ivy Glioblastoma Atlas Project (Ivy GAP) dataset.
Pati S, Verma R, Akbari H, Bilello M, Hill VB, Sako C, Correa R, Beig N, Venet L, Thakur S, Serai P, Ha SM, Blake GD, Shinohara RT, Tiwari P, Bakas S. Pati S, et al. Among authors: shinohara rt. Med Phys. 2020 Dec;47(12):6039-6052. doi: 10.1002/mp.14556. Epub 2020 Dec 4. Med Phys. 2020. PMID: 33118182 Free PMC article.
Multi-institutional noninvasive in vivo characterization of IDH, 1p/19q, and EGFRvIII in glioma using neuro-Cancer Imaging Phenomics Toolkit (neuro-CaPTk).
Rathore S, Mohan S, Bakas S, Sako C, Badve C, Pati S, Singh A, Bounias D, Ngo P, Akbari H, Gastounioti A, Bergman M, Bilello M, Shinohara RT, Yushkevich P, O'Rourke DM, Sloan AE, Kontos D, Nasrallah MP, Barnholtz-Sloan JS, Davatzikos C. Rathore S, et al. Among authors: shinohara rt. Neurooncol Adv. 2021 Jan 23;2(Suppl 4):iv22-iv34. doi: 10.1093/noajnl/vdaa128. eCollection 2020 Dec. Neurooncol Adv. 2021. PMID: 33521638 Free PMC article.
Interactive Machine Learning-Based Multi-Label Segmentation of Solid Tumors and Organs.
Bounias D, Singh A, Bakas S, Pati S, Rathore S, Akbari H, Bilello M, Greenberger BA, Lombardo J, Chitalia RD, Jahani N, Gastounioti A, Hershman M, Roshkovan L, Katz SI, Yousefi B, Lou C, Simpson AL, Do RKG, Shinohara RT, Kontos D, Nikita K, Davatzikos C. Bounias D, et al. Among authors: shinohara rt. Appl Sci (Basel). 2021 Aug 2;11(16):7488. doi: 10.3390/app11167488. Epub 2021 Aug 15. Appl Sci (Basel). 2021. PMID: 34621541 Free PMC article.
Leveraging machine learning predictive biomarkers to augment the statistical power of clinical trials with baseline magnetic resonance imaging.
Lou C, Habes M, Illenberger NA, Ezzati A, Lipton RB, Shaw PA, Stephens-Shields AJ, Akbari H, Doshi J, Davatzikos C, Shinohara RT. Lou C, et al. Among authors: shinohara rt. Brain Commun. 2021 Nov 3;3(4):fcab264. doi: 10.1093/braincomms/fcab264. eCollection 2021. Brain Commun. 2021. PMID: 34806001 Free PMC article.
Mitigating site effects in covariance for machine learning in neuroimaging data.
Chen AA, Beer JC, Tustison NJ, Cook PA, Shinohara RT, Shou H; Alzheimer's Disease Neuroimaging Initiative. Chen AA, et al. Among authors: shinohara rt. Hum Brain Mapp. 2022 Mar;43(4):1179-1195. doi: 10.1002/hbm.25688. Epub 2021 Dec 14. Hum Brain Mapp. 2022. PMID: 34904312 Free PMC article.
310 results