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Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days.
Nunn BL, Timmins-Schiffman E, Mudge MC, Plubell DL, Chebli G, Kubanek J, Riffle M, Noble WS, Harvey E, Nunn TA, Huntemann M, Clum A, Foster B, Foster B, Roux S, Palaniappan K, Mukherjee S, Reddy TBK, Daum C, Copeland A, Chen IA, Ivanova NN, Kyrpides NC, Glavina Del Rio T, Eloe-Fadrosh EA. Nunn BL, et al. Among authors: eloe fadrosh ea. Sci Data. 2024 Nov 22;11(1):1270. doi: 10.1038/s41597-024-04013-5. Sci Data. 2024. PMID: 39578464 Free PMC article.
A functional microbiome catalogue crowdsourced from North American rivers.
Borton MA, McGivern BB, Willi KR, Woodcroft BJ, Mosier AC, Singleton DM, Bambakidis T, Pelly A, Daly RA, Liu F, Freiburger A, Edirisinghe JN, Faria JP, Danczak R, Leleiwi I, Goldman AE, Wilkins MJ, Hall EK, Pennacchio C, Roux S, Eloe-Fadrosh EA, Good SP, Sullivan MB, Wood-Charlson EM, Miller CS, Ross MRV, Henry CS, Crump BC, Stegen JC, Wrighton KC. Borton MA, et al. Among authors: eloe fadrosh ea. Nature. 2025 Jan;637(8044):103-112. doi: 10.1038/s41586-024-08240-z. Epub 2024 Nov 20. Nature. 2025. PMID: 39567690 Free PMC article.
Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days.
Nunn BL, Timmins-Schiffman E, Mudge MC, Plubell D, Chebli G, Kubanek J, Riffle M, Noble WS, Harvey E, Nunn TA, Huntemann M, Clum A, Foster B, Foster B, Roux S, Palaniappan K, Mukherjee S, Reddy TBK, Daum C, Copeland A, Chen IA, Ivanova NN, Kyrpides NC, Glavina Del Rio T, Eloe-Fadrosh EA. Nunn BL, et al. Among authors: eloe fadrosh ea. bioRxiv [Preprint]. 2024 Sep 28:2024.09.27.614549. doi: 10.1101/2024.09.27.614549. bioRxiv. 2024. Update in: Sci Data. 2024 Nov 22;11(1):1270. doi: 10.1038/s41597-024-04013-5 PMID: 39386737 Free PMC article. Updated. Preprint.
Coassembly and binning of a twenty-year metagenomic time-series from Lake Mendota.
Oliver T, Varghese N, Roux S, Schulz F, Huntemann M, Clum A, Foster B, Foster B, Riley R, LaButti K, Egan R, Hajek P, Mukherjee S, Ovchinnikova G, Reddy TBK, Calhoun S, Hayes RD, Rohwer RR, Zhou Z, Daum C, Copeland A, Chen IA, Ivanova NN, Kyrpides NC, Mouncey NJ, Del Rio TG, Grigoriev IV, Hofmeyr S, Oliker L, Yelick K, Anantharaman K, McMahon KD, Woyke T, Eloe-Fadrosh EA. Oliver T, et al. Among authors: eloe fadrosh ea. Sci Data. 2024 Sep 4;11(1):966. doi: 10.1038/s41597-024-03826-8. Sci Data. 2024. PMID: 39231974 Free PMC article.
A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics.
Eloe-Fadrosh EA, Mungall CJ, Miller MA, Smith M, Patil SS, Kelliher JM, Johnson LYD, Rodriguez FE, Chain PSG, Hu B, Thornton MB, McCue LA, McHardy AC, Harris NL, Reddy TBK, Mukherjee S, Hunter CI, Walls R, Schriml LM. Eloe-Fadrosh EA, et al. Methods Mol Biol. 2024;2802:587-609. doi: 10.1007/978-1-0716-3838-5_20. Methods Mol Biol. 2024. PMID: 38819573
Metatranscriptomes of California grassland soil microbial communities in response to rewetting.
Chuckran PF, Estera-Molina K, Huntemann M, Foster B, Roux S, Mukherjee S, Hajek P, Reddy TBK, Daum C, Chen I-MA, Pennacchio C, Eloe-Fadrosh EA, Dijkstra P, Firestone MK, Blazewicz SJ, Pett-Ridge J. Chuckran PF, et al. Among authors: eloe fadrosh ea. Microbiol Resour Announc. 2024 Jun 11;13(6):e0032224. doi: 10.1128/mra.00322-24. Epub 2024 May 21. Microbiol Resour Announc. 2024. PMID: 38771040 Free PMC article.
An integrated metagenomic, metabolomic and transcriptomic survey of Populus across genotypes and environments.
Schadt C, Martin S, Carrell A, Fortner A, Hopp D, Jacobson D, Klingeman D, Kristy B, Phillips J, Piatkowski B, Miller MA, Smith M, Patil S, Flynn M, Canon S, Clum A, Mungall CJ, Pennacchio C, Bowen B, Louie K, Northen T, Eloe-Fadrosh EA, Mayes MA, Muchero W, Weston DJ, Mitchell J, Doktycz M. Schadt C, et al. Among authors: eloe fadrosh ea. Sci Data. 2024 Apr 5;11(1):339. doi: 10.1038/s41597-024-03069-7. Sci Data. 2024. PMID: 38580669 Free PMC article.
Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert.
Nguyen TM, Pombubpa N, Huntemann M, Clum A, Foster B, Foster B, Roux S, Palaniappan K, Varghese N, Mukherjee S, Reddy TBK, Daum C, Copeland A, Chen I-MA, Ivanova NN, Kyrpides NC, Harmon-Smith M, Eloe-Fadrosh EA, Pietrasiak N, Stajich JE, Hom EFY. Nguyen TM, et al. Among authors: eloe fadrosh ea. Microbiol Resour Announc. 2024 Mar 12;13(3):e0098023. doi: 10.1128/mra.00980-23. Epub 2024 Feb 8. Microbiol Resour Announc. 2024. PMID: 38329355 Free PMC article.
88 results