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Page 1
IN VIVO CELL-TYPE AND BRAIN REGION CLASSIFICATION VIA MULTIMODAL CONTRASTIVE LEARNING.
Yu H, Lyu H, Xu EY, Windolf C, Lee EK, Yang F, Shelton AM, Olsen S, Minavi S, Winter O; International Brain Laboratory; Dyer EL, Chandrasekaran C, Steinmetz NA, Paninski L, Hurwitz C. Yu H, et al. Among authors: windolf c. bioRxiv [Preprint]. 2024 Nov 5:2024.11.05.622159. doi: 10.1101/2024.11.05.622159. bioRxiv. 2024. PMID: 39574717 Free PMC article. Preprint.
Lightning Pose: improved animal pose estimation via semi-supervised learning, Bayesian ensembling and cloud-native open-source tools.
Biderman D, Whiteway MR, Hurwitz C, Greenspan N, Lee RS, Vishnubhotla A, Warren R, Pedraja F, Noone D, Schartner MM, Huntenburg JM, Khanal A, Meijer GT, Noel JP, Pan-Vazquez A, Socha KZ, Urai AE; International Brain Laboratory; Cunningham JP, Sawtell NB, Paninski L. Biderman D, et al. Nat Methods. 2024 Jul;21(7):1316-1328. doi: 10.1038/s41592-024-02319-1. Epub 2024 Jun 25. Nat Methods. 2024. PMID: 38918605
DREDge: robust motion correction for high-density extracellular recordings across species.
Windolf C, Yu H, Paulk AC, Meszéna D, Muñoz W, Boussard J, Hardstone R, Caprara I, Jamali M, Kfir Y, Xu D, Chung JE, Sellers KK, Ye Z, Shaker J, Lebedeva A, Raghavan M, Trautmann E, Melin M, Couto J, Garcia S, Coughlin B, Horváth C, Fiáth R, Ulbert I, Movshon JA, Shadlen MN, Churchland MM, Churchland AK, Steinmetz NA, Chang EF, Schweitzer JS, Williams ZM, Cash SS, Paninski L, Varol E. Windolf C, et al. bioRxiv [Preprint]. 2023 Oct 29:2023.10.24.563768. doi: 10.1101/2023.10.24.563768. bioRxiv. 2023. PMID: 37961359 Free PMC article. Preprint.
Bypassing spike sorting: Density-based decoding using spike localization from dense multielectrode probes.
Zhang Y, He T, Boussard J, Windolf C, Winter O, Trautmann E, Roth N, Barrell H, Churchland M, Steinmetz NA; International Brain Laboratory; Varol E, Hurwitz C, Paninski L. Zhang Y, et al. Among authors: windolf c. bioRxiv [Preprint]. 2023 Sep 22:2023.09.21.558869. doi: 10.1101/2023.09.21.558869. bioRxiv. 2023. PMID: 37790422 Free PMC article. Preprint.
Modified Neuropixels probes for recording human neurophysiology in the operating room.
Coughlin B, Muñoz W, Kfir Y, Young MJ, Meszéna D, Jamali M, Caprara I, Hardstone R, Khanna A, Mustroph ML, Trautmann EM, Windolf C, Varol E, Soper DJ, Stavisky SD, Welkenhuysen M, Dutta B, Shenoy KV, Hochberg LR, Mark Richardson R, Williams ZM, Cash SS, Paulk AC. Coughlin B, et al. Among authors: windolf c. Nat Protoc. 2023 Oct;18(10):2927-2953. doi: 10.1038/s41596-023-00871-2. Epub 2023 Sep 11. Nat Protoc. 2023. PMID: 37697108 Review.
Ultra-high density electrodes improve detection, yield, and cell type identification in neuronal recordings.
Ye Z, Shelton AM, Shaker JR, Boussard J, Colonell J, Birman D, Manavi S, Chen S, Windolf C, Hurwitz C, Namima T, Pedraja F, Weiss S, Raducanu B, Ness TV, Jia X, Mastroberardino G, Rossi LF, Carandini M, Häusser M, Einevoll GT, Laurent G, Sawtell NB, Bair W, Pasupathy A, Lopez CM, Dutta B, Paninski L, Siegle JH, Koch C, Olsen SR, Harris TD, Steinmetz NA. Ye Z, et al. Among authors: windolf c. bioRxiv [Preprint]. 2024 Apr 10:2023.08.23.554527. doi: 10.1101/2023.08.23.554527. bioRxiv. 2024. PMID: 37662298 Free PMC article. Preprint.
ROBUST ONLINE MULTIBAND DRIFT ESTIMATION IN ELECTROPHYSIOLOGY DATA.
Windolf C, Paulk AC, Kfir Y, Trautmann E, Meszéna D, Muñoz W, Caprara I, Jamali M, Boussard J, Williams ZM, Cash SS, Paninski L, Varol E. Windolf C, et al. Proc IEEE Int Conf Acoust Speech Signal Process. 2023 Jun;2023:10.1109/icassp49357.2023.10095487. doi: 10.1109/icassp49357.2023.10095487. Epub 2023 May 5. Proc IEEE Int Conf Acoust Speech Signal Process. 2023. PMID: 37388234 Free PMC article.
A modular architecture for organizing, processing and sharing neurophysiology data.
International Brain Laboratory; Bonacchi N, Chapuis GA, Churchland AK, DeWitt EEJ, Faulkner M, Harris KD, Huntenburg JM, Hunter M, Laranjeira IC, Rossant C, Sasaki M, Schartner MM, Shen S, Steinmetz NA, Walker EY, West SJ, Winter O, Wells MJ. International Brain Laboratory, et al. Nat Methods. 2023 Mar;20(3):403-407. doi: 10.1038/s41592-022-01742-6. Epub 2023 Mar 2. Nat Methods. 2023. PMID: 36864199 Free PMC article.
16 results