Chikina M - Search Results

1

Best holdout assessment is sufficient for cancer transcriptomic model selection.

Crawford J, Chikina M, Greene CS. Crawford J, et al. Among authors: chikina m. Patterns (N Y). 2024 Dec 6;5(12):101115. doi: 10.1016/j.patter.2024.101115. eCollection 2024 Dec 13. Patterns (N Y). 2024. PMID: 39776849 Free PMC article.

2

A Pathway-Level Information ExtractoR (PLIER) framework to gain mechanistic insights into obesity in Down syndrome.

Nandi S, Zhu Y, Gillenwater LA, Subirana-Granés M, Zhang H, Janani N, Greene C, Pividori M, Chikina M, Costello JC. Nandi S, et al. Among authors: chikina m. Pac Symp Biocomput. 2025;30:412-425. Pac Symp Biocomput. 2025. PMID: 39670386 Free PMC article.

3

Minus the Error: Estimating d _N/d _S and Testing for Natural Selection in the Presence of Residual Alignment Errors.

Selberg AG, Chikina M, Sackton T, Muse SV, Lucaci AG, Weaver S, Nekrutenko A, Clark N, Pond SLK. Selberg AG, et al. Among authors: chikina m. bioRxiv [Preprint]. 2024 Nov 15:2024.11.13.620707. doi: 10.1101/2024.11.13.620707. bioRxiv. 2024. PMID: 39605407 Free PMC article. Preprint.

4

Trophic Position Stability of Benthic Organisms in a Changing Food Web of an Arctic Fjord Under the Pressure of an Invasive Predatory Snow Crab, Chionoecetes opilio.

Zalota AK, Dgebuadze PY, Kiselev AD, Chikina MV, Udalov AA, Kondar DV, Mishin AV, Tsurikov SM. Zalota AK, et al. Among authors: chikina mv. Biology (Basel). 2024 Oct 28;13(11):874. doi: 10.3390/biology13110874. Biology (Basel). 2024. PMID: 39596829 Free PMC article.

5

RERconverge Expansion: Using Relative Evolutionary Rates to Study Complex Categorical Trait Evolution.

Redlich R, Kowalczyk A, Tene M, Sestili HH, Foley K, Saputra E, Clark N, Chikina M, Meyer WK, Pfenning AR. Redlich R, et al. Among authors: chikina m. Mol Biol Evol. 2024 Nov 1;41(11):msae210. doi: 10.1093/molbev/msae210. Mol Biol Evol. 2024. PMID: 39404101 Free PMC article.

6

Quick and effective approximation of in silico saturation mutagenesis experiments with first-order taylor expansion.

Sasse A, Chikina M, Mostafavi S. Sasse A, et al. Among authors: chikina m. iScience. 2024 Aug 23;27(9):110807. doi: 10.1016/j.isci.2024.110807. eCollection 2024 Sep 20. iScience. 2024. PMID: 39286491 Free PMC article.

7

A hybrid constrained continuous optimization approach for optimal causal discovery from biological data.

Zhu Y, Benos PV, Chikina M. Zhu Y, et al. Among authors: chikina m. Bioinformatics. 2024 Sep 1;40(Suppl 2):ii87-ii97. doi: 10.1093/bioinformatics/btae411. Bioinformatics. 2024. PMID: 39230691 Free PMC article.

8

Unlocking gene regulation with sequence-to-function models.

Sasse A, Chikina M, Mostafavi S. Sasse A, et al. Among authors: chikina m. Nat Methods. 2024 Aug;21(8):1374-1377. doi: 10.1038/s41592-024-02331-5. Nat Methods. 2024. PMID: 39122947 No abstract available.

9

InstaPrism: an R package for fast implementation of BayesPrism.

Hu M, Chikina M. Hu M, et al. Among authors: chikina m. Bioinformatics. 2024 Jul 1;40(7):btae440. doi: 10.1093/bioinformatics/btae440. Bioinformatics. 2024. PMID: 38970377 Free PMC article.

10

Heterogeneous pseudobulk simulation enables realistic benchmarking of cell-type deconvolution methods.

Hu M, Chikina M. Hu M, et al. Among authors: chikina m. Genome Biol. 2024 Jul 1;25(1):169. doi: 10.1186/s13059-024-03292-w. Genome Biol. 2024. PMID: 38956606 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

88 results

Search Page

Filters