Sackton T - Search Results

1

Minus the Error: Estimating d _N/d _S and Testing for Natural Selection in the Presence of Residual Alignment Errors.

Selberg AG, Chikina M, Sackton T, Muse SV, Lucaci AG, Weaver S, Nekrutenko A, Clark N, Pond SLK. Selberg AG, et al. Among authors: sackton t. bioRxiv [Preprint]. 2024 Nov 15:2024.11.13.620707. doi: 10.1101/2024.11.13.620707. bioRxiv. 2024. PMID: 39605407 Free PMC article. Preprint.

2

Practical Guidance and Workflows for Identifying Fast Evolving Non-Coding Genomic Elements Using PhyloAcc.

Thomas GWC, Gemmell P, Shakya SB, Hu Z, Liu JS, Sackton TB, Edwards SV. Thomas GWC, et al. Among authors: sackton tb. Integr Comp Biol. 2024 Nov 21;64(5):1513-1525. doi: 10.1093/icb/icae056. Integr Comp Biol. 2024. PMID: 38816211

3

A nuclear genome assembly of an extinct flightless bird, the little bush moa.

Edwards SV, Cloutier A, Cockburn G, Driver R, Grayson P, Katoh K, Baldwin MW, Sackton TB, Baker AJ. Edwards SV, et al. Among authors: sackton tb. Sci Adv. 2024 May 24;10(21):eadj6823. doi: 10.1126/sciadv.adj6823. Epub 2024 May 23. Sci Adv. 2024. PMID: 38781323 Free article.

4

Rethinking eco-evo studies of gene expression for non-model organisms in the genomic era.

Freedman AH, Sackton TB. Freedman AH, et al. Among authors: sackton tb. Mol Ecol. 2024 May 9:e17378. doi: 10.1111/mec.17378. Online ahead of print. Mol Ecol. 2024. PMID: 38721834 Review.

5

A phylogenetic method linking nucleotide substitution rates to rates of continuous trait evolution.

Gemmell P, Sackton TB, Edwards SV, Liu JS. Gemmell P, et al. Among authors: sackton tb. PLoS Comput Biol. 2024 Apr 24;20(4):e1011995. doi: 10.1371/journal.pcbi.1011995. eCollection 2024 Apr. PLoS Comput Biol. 2024. PMID: 38656999 Free PMC article.

6

A Fast, Reproducible, High-throughput Variant Calling Workflow for Population Genomics.

Mirchandani CD, Shultz AJ, Thomas GWC, Smith SJ, Baylis M, Arnold B, Corbett-Detig R, Enbody E, Sackton TB. Mirchandani CD, et al. Among authors: sackton tb. Mol Biol Evol. 2024 Jan 3;41(1):msad270. doi: 10.1093/molbev/msad270. Mol Biol Evol. 2024. PMID: 38069903 Free PMC article.

7

Convergence in hearing-related genes between echolocating birds and mammals.

Sadanandan KR, Ko MC, Low GW, Gahr M, Edwards SV, Hiller M, Sackton TB, Rheindt FE, Sin SYW, Baldwin MW. Sadanandan KR, et al. Among authors: sackton tb. Proc Natl Acad Sci U S A. 2023 Oct 24;120(43):e2307340120. doi: 10.1073/pnas.2307340120. Epub 2023 Oct 16. Proc Natl Acad Sci U S A. 2023. PMID: 37844245 Free PMC article.

8

PhyloAcc-GT: A Bayesian Method for Inferring Patterns of Substitution Rate Shifts on Targeted Lineages Accounting for Gene Tree Discordance.

Yan H, Hu Z, Thomas GWC, Edwards SV, Sackton TB, Liu JS. Yan H, et al. Among authors: sackton tb. Mol Biol Evol. 2023 Sep 1;40(9):msad195. doi: 10.1093/molbev/msad195. Mol Biol Evol. 2023. PMID: 37665177 Free PMC article.

9

Expanding on Our Knowledge of Ecdysozoan Genomes: A Contiguous Assembly of the Meiofaunal Priapulan Tubiluchus corallicola.

Lord A, Cunha TJ, de Medeiros BAS, Sato S, Khost DE, Sackton TB, Giribet G. Lord A, et al. Among authors: sackton tb. Genome Biol Evol. 2023 Jun 1;15(6):evad103. doi: 10.1093/gbe/evad103. Genome Biol Evol. 2023. PMID: 37279503 Free PMC article.

10

Interpreting the pervasive observation of U-shaped Site Frequency Spectra.

Freund F, Kerdoncuff E, Matuszewski S, Lapierre M, Hildebrandt M, Jensen JD, Ferretti L, Lambert A, Sackton TB, Achaz G. Freund F, et al. Among authors: sackton tb. PLoS Genet. 2023 Mar 23;19(3):e1010677. doi: 10.1371/journal.pgen.1010677. eCollection 2023 Mar. PLoS Genet. 2023. PMID: 36952570 Free PMC article.

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