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Page 1
Studying Mitotic Phosphorylation in Drosophila.
Bonneil É, Larouche M, Emond-Fraser V, Kubiniok P, Pascariu CM, Thibault P, Archambault V. Bonneil É, et al. Among authors: kubiniok p. Methods Mol Biol. 2025;2874:167-182. doi: 10.1007/978-1-0716-4236-8_14. Methods Mol Biol. 2025. PMID: 39614055
Machine learning-enhanced immunopeptidomics applied to T-cell epitope discovery for COVID-19 vaccines.
Kovalchik KA, Hamelin DJ, Kubiniok P, Bourdin B, Mostefai F, Poujol R, Paré B, Simpson SM, Sidney J, Bonneil É, Courcelles M, Saini SK, Shahbazy M, Kapoor S, Rajesh V, Weitzen M, Grenier JC, Gharsallaoui B, Maréchal L, Wu Z, Savoie C, Sette A, Thibault P, Sirois I, Smith MA, Decaluwe H, Hussin JG, Lavallée-Adam M, Caron E. Kovalchik KA, et al. Among authors: kubiniok p. Nat Commun. 2024 Nov 28;15(1):10316. doi: 10.1038/s41467-024-54734-9. Nat Commun. 2024. PMID: 39609459 Free PMC article.
MhcVizPipe: A Quality Control Software for Rapid Assessment of Small- to Large-Scale Immunopeptidome Datasets.
Kovalchik KA, Ma Q, Wessling L, Saab F, Duquette JD, Kubiniok P, Hamelin DJ, Faridi P, Li C, Purcell AW, Jang A, Paramithiotis E, Tognetti M, Reiter L, Bruderer R, Lanoix J, Bonneil É, Courcelles M, Thibault P, Caron E, Sirois I. Kovalchik KA, et al. Among authors: kubiniok p. Mol Cell Proteomics. 2022 Jan;21(1):100178. doi: 10.1016/j.mcpro.2021.100178. Epub 2021 Nov 17. Mol Cell Proteomics. 2022. PMID: 34798331 Free PMC article.
The mutational landscape of SARS-CoV-2 variants diversifies T cell targets in an HLA-supertype-dependent manner.
Hamelin DJ, Fournelle D, Grenier JC, Schockaert J, Kovalchik KA, Kubiniok P, Mostefai F, Duquette JD, Saab F, Sirois I, Smith MA, Pattijn S, Soudeyns H, Decaluwe H, Hussin J, Caron E. Hamelin DJ, et al. Among authors: kubiniok p. Cell Syst. 2022 Feb 16;13(2):143-157.e3. doi: 10.1016/j.cels.2021.09.013. Epub 2021 Oct 6. Cell Syst. 2022. PMID: 34637888 Free PMC article.
The Human Immunopeptidome Project: A Roadmap to Predict and Treat Immune Diseases.
Vizcaíno JA, Kubiniok P, Kovalchik KA, Ma Q, Duquette JD, Mongrain I, Deutsch EW, Peters B, Sette A, Sirois I, Caron E. Vizcaíno JA, et al. Among authors: kubiniok p. Mol Cell Proteomics. 2020 Jan;19(1):31-49. doi: 10.1074/mcp.R119.001743. Epub 2019 Nov 19. Mol Cell Proteomics. 2020. PMID: 31744855 Free PMC article.
PTEN Deficiency and AMPK Activation Promote Nutrient Scavenging and Anabolism in Prostate Cancer Cells.
Kim SM, Nguyen TT, Ravi A, Kubiniok P, Finicle BT, Jayashankar V, Malacrida L, Hou J, Robertson J, Gao D, Chernoff J, Digman MA, Potma EO, Tromberg BJ, Thibault P, Edinger AL. Kim SM, et al. Among authors: kubiniok p. Cancer Discov. 2018 Jul;8(7):866-883. doi: 10.1158/2159-8290.CD-17-1215. Epub 2018 Mar 23. Cancer Discov. 2018. PMID: 29572236 Free PMC article.
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