Kim PM - Search Results

1

A High-Throughput Method for Screening Peptide Activators of G-Protein-Coupled Receptors.

Paudel YP, Valiente PA, Kim J, Kim PM. Paudel YP, et al. Among authors: kim pm. ACS Omega. 2024 Nov 22;9(49):48471-48479. doi: 10.1021/acsomega.4c07071. eCollection 2024 Dec 10. ACS Omega. 2024. PMID: 39676964 Free PMC article.

2

HelixDiff, a Score-Based Diffusion Model for Generating All-Atom α-Helical Structures.

Xie X, Valiente PA, Kim J, Kim PM. Xie X, et al. Among authors: kim pm. ACS Cent Sci. 2024 Apr 5;10(5):1001-1011. doi: 10.1021/acscentsci.3c01488. eCollection 2024 May 22. ACS Cent Sci. 2024. PMID: 38799672 Free PMC article.

3

A Method to Calculate the Relative Binding Free Energy Differences of α-Helical Stapled Peptides.

Valiente PA, Becerra D, Kim PM. Valiente PA, et al. Among authors: kim pm. J Org Chem. 2020 Feb 7;85(3):1644-1651. doi: 10.1021/acs.joc.9b03067. Epub 2020 Jan 13. J Org Chem. 2020. PMID: 31893470

4

Computational Design of Potent D-Peptide Inhibitors of SARS-CoV-2.

Valiente PA, Wen H, Nim S, Lee J, Kim HJ, Kim J, Perez-Riba A, Paudel YP, Hwang I, Kim KD, Kim S, Kim PM. Valiente PA, et al. Among authors: kim hj, kim s, kim kd, kim j, kim pm. J Med Chem. 2021 Oct 28;64(20):14955-14967. doi: 10.1021/acs.jmedchem.1c00655. Epub 2021 Oct 8. J Med Chem. 2021. PMID: 34624194 Free article.

5

HelixGAN a deep-learning methodology for conditional de novo design of α-helix structures.

Xie X, Valiente PA, Kim PM. Xie X, et al. Among authors: kim pm. Bioinformatics. 2023 Jan 1;39(1):btad036. doi: 10.1093/bioinformatics/btad036. Bioinformatics. 2023. PMID: 36651657 Free PMC article.

6

Computational Design of Potent and Selective d-Peptide Agonists of the Glucagon-like Peptide-2 Receptor.

Valiente PA, Nim S, Kim J, Kim PM. Valiente PA, et al. Among authors: kim j, kim pm. J Med Chem. 2023 Aug 10;66(15):10342-10353. doi: 10.1021/acs.jmedchem.3c00464. Epub 2023 Jul 25. J Med Chem. 2023. PMID: 37491005 Free PMC article.

7

Antibody-SGM, a Score-Based Generative Model for Antibody Heavy-Chain Design.

Xie X, Valiente PA, Lee JS, Kim J, Kim PM. Xie X, et al. Among authors: kim pm. J Chem Inf Model. 2024 Sep 9;64(17):6745-6757. doi: 10.1021/acs.jcim.4c00711. Epub 2024 Aug 27. J Chem Inf Model. 2024. PMID: 39189360

8

Targeting the Receptor-Binding Motif of SARS-CoV-2 with D-Peptides Mimicking the ACE2 Binding Helix: Lessons for Inhibiting Omicron and Future Variants of Concern.

Valiente PA, Nim S, Lee J, Kim S, Kim PM. Valiente PA, et al. Among authors: kim s, kim pm. J Chem Inf Model. 2022 Aug 8;62(15):3618-3626. doi: 10.1021/acs.jcim.2c00500. Epub 2022 Jul 24. J Chem Inf Model. 2022. PMID: 35875887

9

Score-based generative modeling for de novo protein design.

Lee JS, Kim J, Kim PM. Lee JS, et al. Among authors: kim j, kim pm. Nat Comput Sci. 2023 May;3(5):382-392. doi: 10.1038/s43588-023-00440-3. Epub 2023 May 4. Nat Comput Sci. 2023. PMID: 38177840

10

Engineering a Rigid Nucleic Acid Structure to Improve the Limit of Detection for Genetic Assays.

Malekjahani A, Lekuti AA, Valiente PA, Osborne M, Li VYC, Kim PM, Chan WCW. Malekjahani A, et al. Among authors: kim pm. Anal Chem. 2024 Jun 11;96(23):9729-9736. doi: 10.1021/acs.analchem.4c02124. Epub 2024 May 27. Anal Chem. 2024. PMID: 38801277

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