Morris Q - Search Results

1

At-RS31 orchestrates hierarchical cross-regulation of splicing factors and integrates alternative splicing with TOR-ABA pathways.

Köster T, Venhuizen P, Lewinski M, Petrillo E, Marquez Y, Fuchs A, Ray D, Nimeth BA, Riegler S, Franzmeier S, Zheng H, Hughes T, Morris Q, Barta A, Staiger D, Kalyna M. Köster T, et al. Among authors: morris q. bioRxiv [Preprint]. 2024 Dec 7:2024.12.04.626797. doi: 10.1101/2024.12.04.626797. bioRxiv. 2024. PMID: 39677721 Free PMC article. Preprint.

2

RNAcompete methodology and application to determine sequence preferences of unconventional RNA-binding proteins.

Ray D, Ha KCH, Nie K, Zheng H, Hughes TR, Morris QD. Ray D, et al. Methods. 2017 Apr 15;118-119:3-15. doi: 10.1016/j.ymeth.2016.12.003. Epub 2016 Dec 10. Methods. 2017. PMID: 27956239 Free PMC article.

3

High-throughput characterization of protein-RNA interactions.

Cook KB, Hughes TR, Morris QD. Cook KB, et al. Brief Funct Genomics. 2015 Jan;14(1):74-89. doi: 10.1093/bfgp/elu047. Epub 2014 Dec 13. Brief Funct Genomics. 2015. PMID: 25504152 Free PMC article. Review.

4

PRIESSTESS: interpretable, high-performing models of the sequence and structure preferences of RNA-binding proteins.

Laverty KU, Jolma A, Pour SE, Zheng H, Ray D, Morris Q, Hughes TR. Laverty KU, et al. Among authors: morris q. Nucleic Acids Res. 2022 Oct 28;50(19):e111. doi: 10.1093/nar/gkac694. Nucleic Acids Res. 2022. PMID: 36018788 Free PMC article.

5

Transcriptional networks: reverse-engineering gene regulation on a global scale.

Chua G, Robinson MD, Morris Q, Hughes TR. Chua G, et al. Among authors: morris q. Curr Opin Microbiol. 2004 Dec;7(6):638-46. doi: 10.1016/j.mib.2004.10.009. Curr Opin Microbiol. 2004. PMID: 15556037 Review.

6

RNAcontext: a new method for learning the sequence and structure binding preferences of RNA-binding proteins.

Kazan H, Ray D, Chan ET, Hughes TR, Morris Q. Kazan H, et al. Among authors: morris q. PLoS Comput Biol. 2010 Jul 1;6(7):e1000832. doi: 10.1371/journal.pcbi.1000832. PLoS Comput Biol. 2010. PMID: 20617199 Free PMC article.

7

RankMotif++: a motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors.

Chen X, Hughes TR, Morris Q. Chen X, et al. Among authors: morris q. Bioinformatics. 2007 Jul 1;23(13):i72-9. doi: 10.1093/bioinformatics/btm224. Bioinformatics. 2007. PMID: 17646348

8

An RRM-ZnF RNA recognition module targets RBM10 to exonic sequences to promote exon exclusion.

Collins KM, Kainov YA, Christodolou E, Ray D, Morris Q, Hughes T, Taylor IA, Makeyev EV, Ramos A. Collins KM, et al. Among authors: morris q. Nucleic Acids Res. 2017 Jun 20;45(11):6761-6774. doi: 10.1093/nar/gkx225. Nucleic Acids Res. 2017. PMID: 28379442 Free PMC article.

9

RNAcompete-S: Combined RNA sequence/structure preferences for RNA binding proteins derived from a single-step in vitro selection.

Cook KB, Vembu S, Ha KCH, Zheng H, Laverty KU, Hughes TR, Ray D, Morris QD. Cook KB, et al. Methods. 2017 Aug 15;126:18-28. doi: 10.1016/j.ymeth.2017.06.024. Epub 2017 Jun 24. Methods. 2017. PMID: 28651966

10

The X-linked splicing regulator MBNL3 has been co-opted to restrict placental growth in eutherians.

Spruce T, Plass M, Gohr A, Ray D, Martínez de Lagrán M, Rot G, Nóvoa A, Burguera D, Permanyer J, Miret M, Zheng H, Swanson MS, Morris Q, Mallo M, Dierssen M, Hughes TR, Pernaute B, Irimia M. Spruce T, et al. Among authors: morris q. PLoS Biol. 2022 Apr 27;20(4):e3001615. doi: 10.1371/journal.pbio.3001615. eCollection 2022 Apr. PLoS Biol. 2022. PMID: 35476669 Free PMC article.

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