Mäkelä J - Search Results

1

Genome concentration limits cell growth and modulates proteome composition in Escherichia coli.

Mäkelä J, Papagiannakis A, Lin WH, Lanz MC, Glenn S, Swaffer M, Marinov GK, Skotheim JM, Jacobs-Wagner C. Mäkelä J, et al. Elife. 2024 Dec 23;13:RP97465. doi: 10.7554/eLife.97465. Elife. 2024. PMID: 39714909 Free PMC article.

2

Competitive binding of MatP and topoisomerase IV to the MukB hinge domain.

Fisher GL, Bolla JR, Rajasekar KV, Mäkelä J, Baker R, Zhou M, Prince JP, Stracy M, Robinson CV, Arciszewska LK, Sherratt DJ. Fisher GL, et al. Among authors: makela j. Elife. 2021 Sep 29;10:e70444. doi: 10.7554/eLife.70444. Elife. 2021. PMID: 34585666 Free PMC article.

3

Self-organised segregation of bacterial chromosomal origins.

Hofmann A, Mäkelä J, Sherratt DJ, Heermann D, Murray SM. Hofmann A, et al. Among authors: makela j. Elife. 2019 Aug 9;8:e46564. doi: 10.7554/eLife.46564. Elife. 2019. PMID: 31397672 Free PMC article.

4

Nonrandom segregation of sister chromosomes by Escherichia coli MukBEF.

Mäkelä J, Uphoff S, Sherratt DJ. Mäkelä J, et al. Proc Natl Acad Sci U S A. 2021 Aug 17;118(33):e2022078118. doi: 10.1073/pnas.2022078118. Proc Natl Acad Sci U S A. 2021. PMID: 34385314 Free PMC article.

5

Effects of codon sequence on the dynamics of genetic networks.

Potapov I, Mäkelä J, Yli-Harja O, Ribeiro AS. Potapov I, et al. Among authors: makela j. J Theor Biol. 2012 Dec 21;315:17-25. doi: 10.1016/j.jtbi.2012.08.029. Epub 2012 Aug 31. J Theor Biol. 2012. PMID: 22960571

6

Stochastic sequence-level model of coupled transcription and translation in prokaryotes.

Mäkelä J, Lloyd-Price J, Yli-Harja O, Ribeiro AS. Mäkelä J, et al. BMC Bioinformatics. 2011 Apr 26;12:121. doi: 10.1186/1471-2105-12-121. BMC Bioinformatics. 2011. PMID: 21521517 Free PMC article.

7

Rate-limiting steps in transcription dictate sensitivity to variability in cellular components.

Mäkelä J, Kandavalli V, Ribeiro AS. Mäkelä J, et al. Sci Rep. 2017 Sep 6;7(1):10588. doi: 10.1038/s41598-017-11257-2. Sci Rep. 2017. PMID: 28878283 Free PMC article.

8

Dynamics of transcription of closely spaced promoters in Escherichia coli, one event at a time.

Martins L, Mäkelä J, Häkkinen A, Kandhavelu M, Yli-Harja O, Fonseca JM, Ribeiro AS. Martins L, et al. Among authors: makela j. J Theor Biol. 2012 May 21;301:83-94. doi: 10.1016/j.jtbi.2012.02.015. Epub 2012 Feb 20. J Theor Biol. 2012. PMID: 22370562

9

In vivo single-molecule kinetics of activation and subsequent activity of the arabinose promoter.

Mäkelä J, Kandhavelu M, Oliveira SM, Chandraseelan JG, Lloyd-Price J, Peltonen J, Yli-Harja O, Ribeiro AS. Mäkelä J, et al. Nucleic Acids Res. 2013 Jul;41(13):6544-52. doi: 10.1093/nar/gkt350. Epub 2013 May 3. Nucleic Acids Res. 2013. PMID: 23644285 Free PMC article.

10

Acyl carrier protein promotes MukBEF action in Escherichia coli chromosome organization-segregation.

Prince JP, Bolla JR, Fisher GLM, Mäkelä J, Fournier M, Robinson CV, Arciszewska LK, Sherratt DJ. Prince JP, et al. Among authors: makela j. Nat Commun. 2021 Nov 18;12(1):6721. doi: 10.1038/s41467-021-27107-9. Nat Commun. 2021. PMID: 34795302 Free PMC article.

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