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Insights into Treponema pallidum genomics from modern and ancient genomes using a novel mapping strategy.
Pla-Díaz M, Akgül G, Molak M, du Plessis L, Panagiotopoulou H, Doan K, Bogdanowicz W, Dąbrowski P, Oziembłowski M, Kwiatkowska B, Szczurowski J, Grzelak J, Arora N, Majander K, González-Candelas F, Schuenemann VJ. Pla-Díaz M, et al. Among authors: schuenemann vj. BMC Biol. 2025 Jan 8;23(1):7. doi: 10.1186/s12915-024-02108-4. BMC Biol. 2025. PMID: 39780098 Free PMC article.
Ancient Bacterial Genomes Reveal a High Diversity of Treponema pallidum Strains in Early Modern Europe.
Majander K, Pfrengle S, Kocher A, Neukamm J, du Plessis L, Pla-Díaz M, Arora N, Akgül G, Salo K, Schats R, Inskip S, Oinonen M, Valk H, Malve M, Kriiska A, Onkamo P, González-Candelas F, Kühnert D, Krause J, Schuenemann VJ. Majander K, et al. Among authors: schuenemann vj. Curr Biol. 2020 Oct 5;30(19):3788-3803.e10. doi: 10.1016/j.cub.2020.07.058. Epub 2020 Aug 13. Curr Biol. 2020. PMID: 32795443 Free article.
Redefining the treponemal history through pre-Columbian genomes from Brazil.
Majander K, Pla-Díaz M, du Plessis L, Arora N, Filippini J, Pezo-Lanfranco L, Eggers S, González-Candelas F, Schuenemann VJ. Majander K, et al. Among authors: schuenemann vj. Nature. 2024 Mar;627(8002):182-188. doi: 10.1038/s41586-023-06965-x. Epub 2024 Jan 24. Nature. 2024. PMID: 38267579 Free PMC article.
Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster.
Arora N, Schuenemann VJ, Jäger G, Peltzer A, Seitz A, Herbig A, Strouhal M, Grillová L, Sánchez-Busó L, Kühnert D, Bos KI, Davis LR, Mikalová L, Bruisten S, Komericki P, French P, Grant PR, Pando MA, Vaulet LG, Fermepin MR, Martinez A, Centurion Lara A, Giacani L, Norris SJ, Šmajs D, Bosshard PP, González-Candelas F, Nieselt K, Krause J, Bagheri HC. Arora N, et al. Among authors: schuenemann vj. Nat Microbiol. 2016 Dec 5;2:16245. doi: 10.1038/nmicrobiol.2016.245. Nat Microbiol. 2016. PMID: 27918528 Free article.
2000-year-old pathogen genomes reconstructed from metagenomic analysis of Egyptian mummified individuals.
Neukamm J, Pfrengle S, Molak M, Seitz A, Francken M, Eppenberger P, Avanzi C, Reiter E, Urban C, Welte B, Stockhammer PW, Teßmann B, Herbig A, Harvati K, Nieselt K, Krause J, Schuenemann VJ. Neukamm J, et al. Among authors: schuenemann vj. BMC Biol. 2020 Aug 28;18(1):108. doi: 10.1186/s12915-020-00839-8. BMC Biol. 2020. PMID: 32859198 Free PMC article.
Mycobacterium leprae diversity and population dynamics in medieval Europe from novel ancient genomes.
Pfrengle S, Neukamm J, Guellil M, Keller M, Molak M, Avanzi C, Kushniarevich A, Montes N, Neumann GU, Reiter E, Tukhbatova RI, Berezina NY, Buzhilova AP, Korobov DS, Suppersberger Hamre S, Matos VMJ, Ferreira MT, González-Garrido L, Wasterlain SN, Lopes C, Santos AL, Antunes-Ferreira N, Duarte V, Silva AM, Melo L, Sarkic N, Saag L, Tambets K, Busso P, Cole ST, Avlasovich A, Roberts CA, Sheridan A, Cessford C, Robb J, Krause J, Scheib CL, Inskip SA, Schuenemann VJ. Pfrengle S, et al. Among authors: schuenemann vj. BMC Biol. 2021 Oct 5;19(1):220. doi: 10.1186/s12915-021-01120-2. BMC Biol. 2021. PMID: 34610848 Free PMC article.
Comparison of target enrichment strategies for ancient pathogen DNA.
Furtwängler A, Neukamm J, Böhme L, Reiter E, Vollstedt M, Arora N, Singh P, Cole ST, Knauf S, Calvignac-Spencer S, Krause-Kyora B, Krause J, Schuenemann VJ, Herbig A. Furtwängler A, et al. Among authors: schuenemann vj. Biotechniques. 2020 Dec;69(6):455-459. doi: 10.2144/btn-2020-0100. Epub 2020 Nov 2. Biotechniques. 2020. PMID: 33135465 Free article.
71 results