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Page 1
Quantifying Metagenomic Strain Associations from Microbiomes with Anpan.
Ghazi AR, Thompson KN, Bhosle A, Mei Z, Yan Y, Wang F, Wang K, Franzosa EA, Huttenhower C. Ghazi AR, et al. Among authors: huttenhower c. bioRxiv [Preprint]. 2025 Jan 7:2025.01.06.631550. doi: 10.1101/2025.01.06.631550. bioRxiv. 2025. PMID: 39829854 Free PMC article. Preprint.
Early life microbial succession in the gut follows common patterns in humans across the globe.
Fahur Bottino G, Bonham KS, Patel F, McCann S, Zieff M, Naspolini N, Ho D, Portlock T, Joos R, Midani FS, Schüroff P, Das A, Shennon I, Wilson BC, O'Sullivan JM, Britton RA, Murray DM, Kiely ME, Taddei CR, Beltrão-Braga PCB, Campos AC, Polanczyk GV, Huttenhower C, Donald KA, Klepac-Ceraj V. Fahur Bottino G, et al. Among authors: huttenhower c. Nat Commun. 2025 Jan 14;16(1):660. doi: 10.1038/s41467-025-56072-w. Nat Commun. 2025. PMID: 39809768 Free PMC article.
A Small-Molecule Inhibitor of Gut Bacterial Urease Protects the Host from Liver Injury.
Richards-Corke KC, Jiang Y, Yeliseyev V, Zhang Y, Franzosa EA, Wang ZA, Yapa Abeywardana M, Cole PA, Huttenhower C, Bry L, Balskus EP. Richards-Corke KC, et al. Among authors: huttenhower c. ACS Chem Biol. 2025 Jan 17;20(1):48-55. doi: 10.1021/acschembio.3c00556. Epub 2025 Jan 8. ACS Chem Biol. 2025. PMID: 39778875 Free PMC article.
Profiling lateral gene transfer events in the human microbiome using WAAFLE.
Hsu TY, Nzabarushimana E, Wong D, Luo C, Beiko RG, Langille M, Huttenhower C, Nguyen LH, Franzosa EA. Hsu TY, et al. Among authors: huttenhower c. Nat Microbiol. 2025 Jan;10(1):94-111. doi: 10.1038/s41564-024-01881-w. Epub 2025 Jan 2. Nat Microbiol. 2025. PMID: 39747694
Evaluating metagenomic analyses for undercharacterized environments: what's needed to light up the microbial dark matter?
Nickols WA, McIver LJ, Walsh A, Zhang Y, Nearing JT, Asnicar F, Punčochář M, Segata N, Nguyen LH, Hartmann EM, Franzosa EA, Huttenhower C, Thompson KN. Nickols WA, et al. Among authors: huttenhower c. bioRxiv [Preprint]. 2024 Nov 9:2024.11.08.622677. doi: 10.1101/2024.11.08.622677. bioRxiv. 2024. PMID: 39574575 Free PMC article. Preprint.
Coffee consumption is associated with intestinal Lawsonibacter asaccharolyticus abundance and prevalence across multiple cohorts.
Manghi P, Bhosle A, Wang K, Marconi R, Selma-Royo M, Ricci L, Asnicar F, Golzato D, Ma W, Hang D, Thompson KN, Franzosa EA, Nabinejad A, Tamburini S, Rimm EB, Garrett WS, Sun Q, Chan AT, Valles-Colomer M, Arumugam M, Bermingham KM, Giordano F, Davies R, Hadjigeorgiou G, Wolf J, Strowig T, Berry SE, Huttenhower C, Spector TD, Segata N, Song M. Manghi P, et al. Among authors: huttenhower c. Nat Microbiol. 2024 Dec;9(12):3120-3134. doi: 10.1038/s41564-024-01858-9. Epub 2024 Nov 18. Nat Microbiol. 2024. PMID: 39558133 Free PMC article.
321 results