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Data reuse in agricultural genomics research: challenges and recommendations.
Hafner A, DeLeo V, Deng CH, Elsik CG, S Fleming D, Harrison PW, Kalbfleisch TS, Petry B, Pucker B, Quezada-Rodríguez EH, Tuggle CK, Koltes JE. Hafner A, et al. Among authors: koltes je. Gigascience. 2025 Jan 6;14:giae106. doi: 10.1093/gigascience/giae106. Gigascience. 2025. PMID: 39804724 Free PMC article. Review.
Building a FAIR data ecosystem for incorporating single-cell transcriptomics data into agricultural genome to phenome research.
Kapoor M, Ventura ES, Walsh A, Sokolov A, George N, Kumari S, Provart NJ, Cole B, Libault M, Tickle T, Warren WC, Koltes JE, Papatheodorou I, Ware D, Harrison PW, Elsik C, Yordanova G, Burdett T, Tuggle CK. Kapoor M, et al. Among authors: koltes je. Front Genet. 2024 Nov 29;15:1460351. doi: 10.3389/fgene.2024.1460351. eCollection 2024. Front Genet. 2024. PMID: 39678381 Free PMC article.
Assessing different cross-validation schemes for predicting novel traits using sensor data: An application to dry matter intake and residual feed intake using milk spectral data.
Yilmaz Adkinson A, Abouhawwash M, VandeHaar MJ, Parker Gaddis KL, Burchard J, Peñagaricano F, White HM, Weigel KA, Baldwin R, Santos JEP, Koltes JE, Tempelman RJ. Yilmaz Adkinson A, et al. Among authors: koltes je. J Dairy Sci. 2024 Oct;107(10):8084-8099. doi: 10.3168/jds.2024-24701. Epub 2024 Jun 13. J Dairy Sci. 2024. PMID: 38876215 Free article.
Enhanced bovine genome annotation through integration of transcriptomics and epi-transcriptomics datasets facilitates genomic biology.
Beiki H, Murdoch BM, Park CA, Kern C, Kontechy D, Becker G, Rincon G, Jiang H, Zhou H, Thorne J, Koltes JE, Michal JJ, Davenport K, Rijnkels M, Ross PJ, Hu R, Corum S, McKay S, Smith TPL, Liu W, Ma W, Zhang X, Xu X, Han X, Jiang Z, Hu ZL, Reecy JM. Beiki H, et al. Among authors: koltes je. Gigascience. 2024 Jan 2;13:giae019. doi: 10.1093/gigascience/giae019. Gigascience. 2024. PMID: 38626724 Free PMC article.
Estimation of genetic parameters for feed efficiency traits using random regression models in dairy cattle.
Houlahan K, Schenkel FS, Miglior F, Jamrozik J, Stephansen RB, González-Recio O, Charfeddine N, Segelke D, Butty AM, Stratz P, VandeHaar MJ, Tempelman RJ, Weigel K, White H, Peñagaricano F, Koltes JE, Santos JEP, Baldwin RL 6th, Baes CF. Houlahan K, et al. Among authors: koltes je. J Dairy Sci. 2024 Mar;107(3):1523-1534. doi: 10.3168/jds.2022-23124. Epub 2023 Sep 9. J Dairy Sci. 2024. PMID: 37690722 Free article.
63 results