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204 results

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Cell-type-resolved chromatin accessibility in the human intestine identifies complex regulatory programs and clarifies genetic associations in Crohn's disease.
Zhao Y, Zhou R, Mu Z, Carbonetto P, Zhong X, Xie B, Luo K, Cham CM, Koval J, He X, Dahl AW, Liu X, Chang EB, Basu A, Pott S. Zhao Y, et al. Among authors: koval j. medRxiv [Preprint]. 2024 Dec 11:2024.12.10.24318718. doi: 10.1101/2024.12.10.24318718. medRxiv. 2024. PMID: 39711713 Free PMC article. Preprint.
A novel conjugative transposon carrying an autonomously amplified plasmid.
Vineis JH, Reznikoff WS, Antonopoulos DA, Koval J, Chang E, Fallon BR, Paul BG, Morrison HG, Sogin ML. Vineis JH, et al. Among authors: koval j. mBio. 2024 Feb 14;15(2):e0278723. doi: 10.1128/mbio.02787-23. Epub 2024 Jan 23. mBio. 2024. PMID: 38259081 Free PMC article.
Microbially catalyzed conjugation of GABA and tyramine to bile acids.
Mullowney MW, Fiebig A, Schnizlein MK, McMillin M, Rose AR, Koval J, Rubin D, Dalal S, Sogin ML, Chang EB, Sidebottom AM, Crosson S. Mullowney MW, et al. Among authors: koval j. J Bacteriol. 2024 Jan 25;206(1):e0042623. doi: 10.1128/jb.00426-23. Epub 2024 Jan 4. J Bacteriol. 2024. PMID: 38174933 Free PMC article.
Multiomic analysis reveals cellular, transcriptomic and epigenetic changes in intestinal pouches of ulcerative colitis patients.
Zhao Y, Zhou R, Xie B, Liu CY, Kalski M, Cham CM, Jiang Z, Koval J, Weber CR, Rubin DT, Sogin M, Crosson S, Chen M, Huang J, Fiebig A, Dalal S, Chang EB, Basu A, Pott S. Zhao Y, et al. Among authors: koval j. medRxiv [Preprint]. 2025 Jan 9:2023.11.11.23298309. doi: 10.1101/2023.11.11.23298309. medRxiv. 2025. PMID: 38014192 Free PMC article. Preprint.
Microbially-catalyzed conjugation of GABA and tyramine to bile acids.
Mullowney MW, Fiebig A, Schnizlein MK, McMillin M, Rose AR, Koval J, Rubin D, Dalal S, Sogin ML, Chang EB, Sidebottom AM, Crosson S. Mullowney MW, et al. Among authors: koval j. bioRxiv [Preprint]. 2023 Dec 13:2023.09.25.559407. doi: 10.1101/2023.09.25.559407. bioRxiv. 2023. Update in: J Bacteriol. 2024 Jan 25;206(1):e0042623. doi: 10.1128/jb.00426-23 PMID: 37808758 Free PMC article. Updated. Preprint.
Integrative omics identifies conserved and pathogen-specific responses of sepsis-causing bacteria.
Mu A, Klare WP, Baines SL, Ignatius Pang CN, Guérillot R, Harbison-Price N, Keller N, Wilksch J, Nhu NTK, Phan MD, Keller B, Nijagal B, Tull D, Dayalan S, Chua HHC, Skoneczny D, Koval J, Hachani A, Shah AD, Neha N, Jadhav S, Partridge SR, Cork AJ, Peters K, Bertolla O, Brouwer S, Hancock SJ, Álvarez-Fraga L, De Oliveira DMP, Forde B, Dale A, Mujchariyakul W, Walsh CJ, Monk I, Fitzgerald A, Lum M, Correa-Ospina C, Roy Chowdhury P, Parton RG, De Voss J, Beckett J, Monty F, McKinnon J, Song X, Stephen JR, Everest M, Bellgard MI, Tinning M, Leeming M, Hocking D, Jebeli L, Wang N, Ben Zakour N, Yasar SA, Vecchiarelli S, Russell T, Zaw T, Chen T, Teng D, Kassir Z, Lithgow T, Jenney A, Cole JN, Nizet V, Sorrell TC, Peleg AY, Paterson DL, Beatson SA, Wu J, Molloy MP, Syme AE, Goode RJA, Hunter AA, Bowland G, West NP, Wilkins MR, Djordjevic SP, Davies MR, Seemann T, Howden BP, Pascovici D, Tyagi S, Schittenhelm RB, De Souza DP, McConville MJ, Iredell JR, Cordwell SJ, Strugnell RA, Stinear TP, Schembri MA, Walker MJ. Mu A, et al. Among authors: koval j. Nat Commun. 2023 Mar 18;14(1):1530. doi: 10.1038/s41467-023-37200-w. Nat Commun. 2023. PMID: 36934086 Free PMC article.
204 results