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Cell-type-resolved chromatin accessibility in the human intestine identifies complex regulatory programs and clarifies genetic associations in Crohn's disease.
Zhao Y, Zhou R, Mu Z, Carbonetto P, Zhong X, Xie B, Luo K, Cham CM, Koval J, He X, Dahl AW, Liu X, Chang EB, Basu A, Pott S. Zhao Y, et al. Among authors: pott s. medRxiv [Preprint]. 2024 Dec 11:2024.12.10.24318718. doi: 10.1101/2024.12.10.24318718. medRxiv. 2024. PMID: 39711713 Free PMC article. Preprint.
Multiomic analysis reveals cellular, transcriptomic and epigenetic changes in intestinal pouches of ulcerative colitis patients.
Zhao Y, Zhou R, Xie B, Liu CY, Kalski M, Cham CM, Jiang Z, Koval J, Weber CR, Rubin DT, Sogin M, Crosson S, Chen M, Huang J, Fiebig A, Dalal S, Chang EB, Basu A, Pott S. Zhao Y, et al. Among authors: pott s. medRxiv [Preprint]. 2025 Jan 9:2023.11.11.23298309. doi: 10.1101/2023.11.11.23298309. medRxiv. 2025. PMID: 38014192 Free PMC article. Preprint.
A Roadmap for the Human Gut Cell Atlas.
Zilbauer M, James KR, Kaur M, Pott S, Li Z, Burger A, Thiagarajah JR, Burclaff J, Jahnsen FL, Perrone F, Ross AD, Matteoli G, Stakenborg N, Sujino T, Moor A, Bartolome-Casado R, Bækkevold ES, Zhou R, Xie B, Lau KS, Din S, Magness ST, Yao Q, Beyaz S, Arends M, Denadai-Souza A, Coburn LA, Gaublomme JT, Baldock R, Papatheodorou I, Ordovas-Montanes J, Boeckxstaens G, Hupalowska A, Teichmann SA, Regev A, Xavier RJ, Simmons A, Snyder MP, Wilson KT; Gut Cell Atlas Consortium; Human Cell Atlas Gut Biological Network Consortium. Zilbauer M, et al. Among authors: pott s. Nat Rev Gastroenterol Hepatol. 2023 Sep;20(9):597-614. doi: 10.1038/s41575-023-00784-1. Epub 2023 May 31. Nat Rev Gastroenterol Hepatol. 2023. PMID: 37258747 Free PMC article. Review.
Bile acid fitness determinants of a Bacteroides fragilis isolate from a human pouchitis patient.
Fiebig A, Schnizlein MK, Pena-Rivera S, Trigodet F, Dubey AA, Hennessy M, Basu A, Pott S, Dalal S, Rubin D, Sogin ML, Murat Eren A, Chang EB, Crosson S. Fiebig A, et al. Among authors: pott s. bioRxiv [Preprint]. 2023 Oct 17:2023.05.11.540287. doi: 10.1101/2023.05.11.540287. bioRxiv. 2023. Update in: mBio. 2024 Jan 16;15(1):e0283023. doi: 10.1128/mbio.02830-23 PMID: 37214927 Free PMC article. Updated. Preprint.
Ribonucleotide reductase regulatory subunit M2 drives glioblastoma TMZ resistance through modulation of dNTP production.
Perrault EN, Shireman JM, Ali ES, Lin P, Preddy I, Park C, Budhiraja S, Baisiwala S, Dixit K, James CD, Heiland DH, Ben-Sahra I, Pott S, Basu A, Miska J, Ahmed AU. Perrault EN, et al. Among authors: pott s. Sci Adv. 2023 May 19;9(20):eade7236. doi: 10.1126/sciadv.ade7236. Epub 2023 May 17. Sci Adv. 2023. PMID: 37196077 Free PMC article.
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