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From fold predictions to function predictions: automation of functional site conservation analysis for functional genome predictions.
Zhang B, Rychlewski L, Pawłowski K, Fetrow JS, Skolnick J, Godzik A. Zhang B, et al. Among authors: rychlewski l. Protein Sci. 1999 May;8(5):1104-15. doi: 10.1110/ps.8.5.1104. Protein Sci. 1999. PMID: 10338021 Free PMC article.
A database of functional sites for proteins with known structures, SITE, is constructed and used in conjunction with a simple pattern matching program SiteMatch to evaluate possible function conservation in a recently constructed database of fold predictions for Escherichia coli …
A database of functional sites for proteins with known structures, SITE, is constructed and used in conjunction with a simple pattern matchi …
Improving the quality of twilight-zone alignments.
Jaroszewski L, Rychlewski L, Godzik A. Jaroszewski L, et al. Among authors: rychlewski l. Protein Sci. 2000 Aug;9(8):1487-96. doi: 10.1110/ps.9.8.1487. Protein Sci. 2000. PMID: 10975570 Free PMC article.
Practical lessons from protein structure prediction.
Ginalski K, Grishin NV, Godzik A, Rychlewski L. Ginalski K, et al. Among authors: rychlewski l. Nucleic Acids Res. 2005 Apr 1;33(6):1874-91. doi: 10.1093/nar/gki327. Print 2005. Nucleic Acids Res. 2005. PMID: 15805122 Free PMC article. Review.
141 results