KRAP regulates mitochondrial Ca2+ uptake by licensing IP3 receptor activity and stabilizing ER-mitochondrial junctions

J Cell Sci. 2024 Jun 15;137(12):jcs261728. doi: 10.1242/jcs.261728. Epub 2024 Jun 27.

Abstract

Inositol 1,4,5-trisphosphate (IP3) receptors (IP3Rs) are high-conductance channels that allow the regulated redistribution of Ca2+ from the endoplasmic reticulum (ER) to the cytosol and, at specialized membrane contact sites (MCSs), to other organelles. Only a subset of IP3Rs release Ca2+ to the cytosol in response to IP3. These 'licensed' IP3Rs are associated with Kras-induced actin-interacting protein (KRAP, also known as ITPRID2) beneath the plasma membrane. It is unclear whether KRAP regulates IP3Rs at MCSs. We show, using simultaneous measurements of Ca2+ concentration in the cytosol and mitochondrial matrix, that KRAP also licenses IP3Rs to release Ca2+ to mitochondria. Loss of KRAP abolishes cytosolic and mitochondrial Ca2+ signals evoked by stimulation of IP3Rs via endogenous receptors. KRAP is located at ER-mitochondrial membrane contact sites (ERMCSs) populated by IP3R clusters. Using a proximity ligation assay between IP3R and voltage-dependent anion channel 1 (VDAC1), we show that loss of KRAP reduces the number of ERMCSs. We conclude that KRAP regulates Ca2+ transfer from IP3Rs to mitochondria by both licensing IP3R activity and stabilizing ERMCSs.

Keywords: Ca2+; Endoplasmic reticulum; HeLa cell; Histamine; IP3 receptor; KRAP; MCU; Membrane contact site; Mitochondria; Proximity ligation assay; VDAC1.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Calcium Signaling
  • Calcium* / metabolism
  • Cytosol / metabolism
  • Endoplasmic Reticulum* / metabolism
  • HeLa Cells
  • Humans
  • Inositol 1,4,5-Trisphosphate Receptors* / genetics
  • Inositol 1,4,5-Trisphosphate Receptors* / metabolism
  • Lectins, C-Type
  • Membrane Proteins
  • Mitochondria* / metabolism
  • Mitochondrial Membranes / metabolism
  • Voltage-Dependent Anion Channel 1 / genetics
  • Voltage-Dependent Anion Channel 1 / metabolism

Substances

  • Calcium
  • CLECL1 protein, human
  • Inositol 1,4,5-Trisphosphate Receptors
  • Lectins, C-Type
  • Membrane Proteins
  • Voltage-Dependent Anion Channel 1
  • ITPRID2 protein, human