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Page 1
Chikungunya: a decade of burden in the Americas.
de Souza WM, Ribeiro GS, de Lima STS, de Jesus R, Moreira FRR, Whittaker C, Sallum MAM, Carrington CVF, Sabino EC, Kitron U, Faria NR, Weaver SC. de Souza WM, et al. Lancet Reg Health Am. 2024 Jan 8;30:100673. doi: 10.1016/j.lana.2023.100673. eCollection 2024 Feb. Lancet Reg Health Am. 2024. PMID: 38283942 Free PMC article. Review.
Global disparities in SARS-CoV-2 genomic surveillance.
Brito AF, Semenova E, Dudas G, Hassler GW, Kalinich CC, Kraemer MUG, Ho J, Tegally H, Githinji G, Agoti CN, Matkin LE, Whittaker C; Bulgarian SARS-CoV-2 sequencing group; Communicable Diseases Genomics Network (Australia and New Zealand); COVID-19 Impact Project; Danish Covid-19 Genome Consortium; Fiocruz COVID-19 Genomic Surveillance Network; GISAID core curation team; Network for Genomic Surveillance in South Africa (NGS-SA); Swiss SARS-CoV-2 Sequencing Consortium; Howden BP, Sintchenko V, Zuckerman NS, Mor O, Blankenship HM, de Oliveira T, Lin RTP, Siqueira MM, Resende PC, Vasconcelos ATR, Spilki FR, Aguiar RS, Alexiev I, Ivanov IN, Philipova I, Carrington CVF, Sahadeo NSD, Branda B, Gurry C, Maurer-Stroh S, Naidoo D, von Eije KJ, Perkins MD, van Kerkhove M, Hill SC, Sabino EC, Pybus OG, Dye C, Bhatt S, Flaxman S, Suchard MA, Grubaugh ND, Baele G, Faria NR. Brito AF, et al. Nat Commun. 2022 Nov 16;13(1):7003. doi: 10.1038/s41467-022-33713-y. Nat Commun. 2022. PMID: 36385137 Free PMC article.
Global disparities in SARS-CoV-2 genomic surveillance.
Brito AF, Semenova E, Dudas G, Hassler GW, Kalinich CC, Kraemer MUG, Ho J, Tegally H, Githinji G, Agoti CN, Matkin LE, Whittaker C; Danish Covid-19 Genome Consortium; COVID-19 Impact Project; Network for Genomic Surveillance in South Africa (NGS-SA); GISAID core curation team; Howden BP, Sintchenko V, Zuckerman NS, Mor O, Blankenship HM, de Oliveira T, Lin RTP, Siqueira MM, Resende PC, Vasconcelos ATR, Spilki FR, Aguiar RS, Alexiev I, Ivanov IN, Philipova I, Carrington CVF, Sahadeo NSD, Gurry C, Maurer-Stroh S, Naidoo D, von Eije KJ, Perkins MD, van Kerkhove M, Hill SC, Sabino EC, Pybus OG, Dye C, Bhatt S, Flaxman S, Suchard MA, Grubaugh ND, Baele G, Faria NR. Brito AF, et al. medRxiv [Preprint]. 2021 Dec 9:2021.08.21.21262393. doi: 10.1101/2021.08.21.21262393. medRxiv. 2021. Update in: Nat Commun. 2022 Nov 16;13(1):7003. doi: 10.1038/s41467-022-33713-y. PMID: 34462754 Free PMC article. Updated. Preprint.
Dispersal patterns and influence of air travel during the global expansion of SARS-CoV-2 variants of concern.
Tegally H, Wilkinson E, Tsui JL, Moir M, Martin D, Brito AF, Giovanetti M, Khan K, Huber C, Bogoch II, San JE, Poongavanan J, Xavier JS, Candido DDS, Romero F, Baxter C, Pybus OG, Lessells RJ, Faria NR, Kraemer MUG, de Oliveira T. Tegally H, et al. Cell. 2023 Jul 20;186(15):3277-3290.e16. doi: 10.1016/j.cell.2023.06.001. Epub 2023 Jun 7. Cell. 2023. PMID: 37413988 Free PMC article.
Emergence and widespread circulation of a recombinant SARS-CoV-2 lineage in North America.
Gutierrez B, Castelán Sánchez HG, Candido DDS, Jackson B, Fleishon S, Houzet R, Ruis C, Delaye L, Faria NR, Rambaut A, Pybus OG, Escalera-Zamudio M. Gutierrez B, et al. Cell Host Microbe. 2022 Aug 10;30(8):1112-1123.e3. doi: 10.1016/j.chom.2022.06.010. Epub 2022 Jun 20. Cell Host Microbe. 2022. PMID: 35853454 Free PMC article.
Molecular Epidemiology of Mayaro Virus among Febrile Patients, Roraima State, Brazil, 2018-2021.
Forato J, Meira CA, Claro IM, Amorim MR, de Souza GF, Muraro SP, Toledo-Teixeira DA, Dias MF, Meneses CAR, Angerami RN, Lalwani P, Weaver SC, Sabino EC, Faria NR, de Souza WM, Granja F, Proenca-Modena JL. Forato J, et al. Emerg Infect Dis. 2024 May;30(5):1013-1016. doi: 10.3201/eid3005.231406. Emerg Infect Dis. 2024. PMID: 38666638 Free PMC article.
Rapid viral metagenomics using SMART-9N amplification and nanopore sequencing.
Claro IM, Ramundo MS, Coletti TM, da Silva CAM, Valenca IN, Candido DS, Sales FCS, Manuli ER, de Jesus JG, de Paula A, Felix AC, Andrade PDS, Pinho MC, Souza WM, Amorim MR, Proenca-Modena JL, Kallas EG, Levi JE, Faria NR, Sabino EC, Loman NJ, Quick J. Claro IM, et al. Wellcome Open Res. 2023 Apr 24;6:241. doi: 10.12688/wellcomeopenres.17170.2. eCollection 2021. Wellcome Open Res. 2023. PMID: 37224315 Free PMC article.
Pathophysiology of chikungunya virus infection associated with fatal outcomes.
de Souza WM, Fumagalli MJ, de Lima STS, Parise PL, Carvalho DCM, Hernandez C, de Jesus R, Delafiori J, Candido DS, Carregari VC, Muraro SP, Souza GF, Simões Mello LM, Claro IM, Díaz Y, Kato RB, Trentin LN, Costa CHS, Maximo ACBM, Cavalcante KF, Fiuza TS, Viana VAF, Melo MEL, Ferraz CPM, Silva DB, Duarte LMF, Barbosa PP, Amorim MR, Judice CC, Toledo-Teixeira DA, Ramundo MS, Aguilar PV, Araújo ELL, Costa FTM, Cerqueira-Silva T, Khouri R, Boaventura VS, Figueiredo LTM, Fang R, Moreno B, López-Vergès S, Mello LP, Skaf MS, Catharino RR, Granja F, Martins-de-Souza D, Plante JA, Plante KS, Sabino EC, Diamond MS, Eugenin E, Proença-Módena JL, Faria NR, Weaver SC. de Souza WM, et al. Cell Host Microbe. 2024 Apr 10;32(4):606-622.e8. doi: 10.1016/j.chom.2024.02.011. Epub 2024 Mar 12. Cell Host Microbe. 2024. PMID: 38479396 Free PMC article.
Shotgun metagenomic sequencing of the first case of monkeypox virus in Brazil, 2022.
Claro IM, Romano CM, Candido DDS, Lima EL, Lindoso JAL, Ramundo MS, Moreira FRR, Barra LAC, Borges LMS, Medeiros LA, Tomishige MYS, Moutinho T, Silva AJDD, Rodrigues CCM, Azevedo LCF, Villas-Boas LS, Silva CAMD, Coletti TM, Manuli ER, O'Toole A, Quick J, Loman N, Rambaut A, Faria NR, Figueiredo-Mello C, Sabino EC. Claro IM, et al. Rev Inst Med Trop Sao Paulo. 2022 Jun 24;64:e48. doi: 10.1590/S1678-9946202264048. eCollection 2022. Rev Inst Med Trop Sao Paulo. 2022. PMID: 35749419 Free PMC article.
Lessons from a Multilaboratorial Task Force for Diagnosis of a Fatal Toxoplasmosis Outbreak in Captive Primates in Brazil.
Schiffler FB, Pereira AHB, Moreira SB, Arruda IF, Moreira FRR, D'arc M, Claro IM, Pissinatti TA, Cavalcante LTF, Miranda TDS, Cosentino MAC, de Oliveira RC, Fernandes J, Assis MRDS, de Oliveira JG, da Silva TAC, Galliez RM, Faffe DS, de Jesus JG, Sobreira Bezerra da Silva M, Bezerra MF, Ferreira Junior ODC, Tanuri A, Castiñeiras TM, Aguiar RS, Faria NR, Almeida AP, Pissinatti A, Sabino EC, Amendoeira MRR, de Lemos ERS, Ubiali DG, Santos AFA. Schiffler FB, et al. Microorganisms. 2023 Nov 29;11(12):2888. doi: 10.3390/microorganisms11122888. Microorganisms. 2023. PMID: 38138032 Free PMC article.
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