LM007276/LM/NLM NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2003	7
2004	1
2005	3
2006	1
2024	0

1

Dichotomous splicing signals in exon flanks.

Zhang XH, Leslie CS, Chasin LA. Zhang XH, et al. Genome Res. 2005 Jun;15(6):768-79. doi: 10.1101/gr.3217705. Genome Res. 2005. PMID: 15930489 Free PMC article.

2

Profiling condition-specific, genome-wide regulation of mRNA stability in yeast.

Foat BC, Houshmandi SS, Olivas WM, Bussemaker HJ. Foat BC, et al. Proc Natl Acad Sci U S A. 2005 Dec 6;102(49):17675-80. doi: 10.1073/pnas.0503803102. Epub 2005 Nov 29. Proc Natl Acad Sci U S A. 2005. PMID: 16317069 Free PMC article.

3

A classification-based framework for predicting and analyzing gene regulatory response.

Kundaje A, Middendorf M, Shah M, Wiggins CH, Freund Y, Leslie C. Kundaje A, et al. BMC Bioinformatics. 2006 Mar 20;7 Suppl 1(Suppl 1):S5. doi: 10.1186/1471-2105-7-S1-S5. BMC Bioinformatics. 2006. PMID: 16723008 Free PMC article.

4

REDUCE: An online tool for inferring cis-regulatory elements and transcriptional module activities from microarray data.

Roven C, Bussemaker HJ. Roven C, et al. Nucleic Acids Res. 2003 Jul 1;31(13):3487-90. doi: 10.1093/nar/gkg630. Nucleic Acids Res. 2003. PMID: 12824350 Free PMC article.

5

Revisiting the codon adaptation index from a whole-genome perspective: analyzing the relationship between gene expression and codon occurrence in yeast using a variety of models.

Jansen R, Bussemaker HJ, Gerstein M. Jansen R, et al. Nucleic Acids Res. 2003 Apr 15;31(8):2242-51. doi: 10.1093/nar/gkg306. Nucleic Acids Res. 2003. PMID: 12682375 Free PMC article.

6

Sequence information for the splicing of human pre-mRNA identified by support vector machine classification.

Zhang XH, Heller KA, Hefter I, Leslie CS, Chasin LA. Zhang XH, et al. Genome Res. 2003 Dec;13(12):2637-50. doi: 10.1101/gr.1679003. Genome Res. 2003. PMID: 14656968 Free PMC article.

7

Genomewide analysis of Drosophila GAGA factor target genes reveals context-dependent DNA binding.

van Steensel B, Delrow J, Bussemaker HJ. van Steensel B, et al. Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2580-5. doi: 10.1073/pnas.0438000100. Epub 2003 Feb 24. Proc Natl Acad Sci U S A. 2003. PMID: 12601174 Free PMC article.

8

Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution.

Richards S, Liu Y, Bettencourt BR, Hradecky P, Letovsky S, Nielsen R, Thornton K, Hubisz MJ, Chen R, Meisel RP, Couronne O, Hua S, Smith MA, Zhang P, Liu J, Bussemaker HJ, van Batenburg MF, Howells SL, Scherer SE, Sodergren E, Matthews BB, Crosby MA, Schroeder AJ, Ortiz-Barrientos D, Rives CM, Metzker ML, Muzny DM, Scott G, Steffen D, Wheeler DA, Worley KC, Havlak P, Durbin KJ, Egan A, Gill R, Hume J, Morgan MB, Miner G, Hamilton C, Huang Y, Waldron L, Verduzco D, Clerc-Blankenburg KP, Dubchak I, Noor MA, Anderson W, White KP, Clark AG, Schaeffer SW, Gelbart W, Weinstock GM, Gibbs RA. Richards S, et al. Genome Res. 2005 Jan;15(1):1-18. doi: 10.1101/gr.3059305. Genome Res. 2005. PMID: 15632085 Free PMC article.

9

The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes.

Versteeg R, van Schaik BD, van Batenburg MF, Roos M, Monajemi R, Caron H, Bussemaker HJ, van Kampen AH. Versteeg R, et al. Genome Res. 2003 Sep;13(9):1998-2004. doi: 10.1101/gr.1649303. Epub 2003 Aug 12. Genome Res. 2003. PMID: 12915492 Free PMC article.

10

Genomic binding by the Drosophila Myc, Max, Mad/Mnt transcription factor network.

Orian A, van Steensel B, Delrow J, Bussemaker HJ, Li L, Sawado T, Williams E, Loo LW, Cowley SM, Yost C, Pierce S, Edgar BA, Parkhurst SM, Eisenman RN. Orian A, et al. Genes Dev. 2003 May 1;17(9):1101-14. doi: 10.1101/gad.1066903. Epub 2003 Apr 14. Genes Dev. 2003. PMID: 12695332 Free PMC article.

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