R01 GM097253/GM/NIGMS NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2012	2
2013	6
2014	2
2016	2
2017	1
2018	2
2024	0

1

Identification of methylation haplotype blocks aids in deconvolution of heterogeneous tissue samples and tumor tissue-of-origin mapping from plasma DNA.

Guo S, Diep D, Plongthongkum N, Fung HL, Zhang K, Zhang K. Guo S, et al. Nat Genet. 2017 Apr;49(4):635-642. doi: 10.1038/ng.3805. Epub 2017 Mar 6. Nat Genet. 2017. PMID: 28263317 Free PMC article.

2

Global DNA methylation and transcriptional analyses of human ESC-derived cardiomyocytes.

Gu Y, Liu GH, Plongthongkum N, Benner C, Yi F, Qu J, Suzuki K, Yang J, Zhang W, Li M, Montserrat N, Crespo I, Del Sol A, Esteban CR, Zhang K, Izpisua Belmonte JC. Gu Y, et al. Protein Cell. 2014 Jan;5(1):59-68. doi: 10.1007/s13238-013-0016-x. Epub 2014 Jan 29. Protein Cell. 2014. PMID: 24474197 Free PMC article.

3

Characterization of genome-methylome interactions in 22 nuclear pedigrees.

Plongthongkum N, van Eijk KR, de Jong S, Wang T, Sul JH, Boks MP, Kahn RS, Fung HL, Ophoff RA, Zhang K. Plongthongkum N, et al. PLoS One. 2014 Jul 14;9(7):e99313. doi: 10.1371/journal.pone.0099313. eCollection 2014. PLoS One. 2014. PMID: 25019935 Free PMC article.

4

Genome-wide analysis reveals TET- and TDG-dependent 5-methylcytosine oxidation dynamics.

Shen L, Wu H, Diep D, Yamaguchi S, D'Alessio AC, Fung HL, Zhang K, Zhang Y. Shen L, et al. Cell. 2013 Apr 25;153(3):692-706. doi: 10.1016/j.cell.2013.04.002. Epub 2013 Apr 18. Cell. 2013. PMID: 23602152 Free PMC article.

5

Library-free methylation sequencing with bisulfite padlock probes.

Diep D, Plongthongkum N, Gore A, Fung HL, Shoemaker R, Zhang K. Diep D, et al. Nat Methods. 2012 Feb 5;9(3):270-2. doi: 10.1038/nmeth.1871. Nat Methods. 2012. PMID: 22306810 Free PMC article.

6

Chromatin signature of widespread monoallelic expression.

Nag A, Savova V, Fung HL, Miron A, Yuan GC, Zhang K, Gimelbrant AA. Nag A, et al. Elife. 2013 Dec 31;2:e01256. doi: 10.7554/eLife.01256. Elife. 2013. PMID: 24381246 Free PMC article.

7

Large-Scale Targeted DNA Methylation Analysis Using Bisulfite Padlock Probes.

Diep D, Plongthongkum N, Zhang K. Diep D, et al. Methods Mol Biol. 2018;1708:365-382. doi: 10.1007/978-1-4939-7481-8_19. Methods Mol Biol. 2018. PMID: 29224154

8

Microfluidic devices with permeable polymer barriers for capture and transport of biomolecules and cells.

Lee HS, Chu WK, Zhang K, Huang X. Lee HS, et al. Lab Chip. 2013 Sep 7;13(17):3389-97. doi: 10.1039/c3lc50280e. Epub 2013 Jul 5. Lab Chip. 2013. PMID: 23828542 Free PMC article.

9

Identification of a specific reprogramming-associated epigenetic signature in human induced pluripotent stem cells.

Ruiz S, Diep D, Gore A, Panopoulos AD, Montserrat N, Plongthongkum N, Kumar S, Fung HL, Giorgetti A, Bilic J, Batchelder EM, Zaehres H, Kan NG, Schöler HR, Mercola M, Zhang K, Izpisua Belmonte JC. Ruiz S, et al. Proc Natl Acad Sci U S A. 2012 Oct 2;109(40):16196-201. doi: 10.1073/pnas.1202352109. Epub 2012 Sep 18. Proc Natl Acad Sci U S A. 2012. PMID: 22991473 Free PMC article.

10

Characterization of chromatin accessibility with a transposome hypersensitive sites sequencing (THS-seq) assay.

Sos BC, Fung HL, Gao DR, Osothprarop TF, Kia A, He MM, Zhang K. Sos BC, et al. Genome Biol. 2016 Feb 4;17:20. doi: 10.1186/s13059-016-0882-7. Genome Biol. 2016. PMID: 26846207 Free PMC article.

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