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The analysis of ChIP-Seq data.
Ma W, Wong WH. Ma W, et al. Methods Enzymol. 2011;497:51-73. doi: 10.1016/B978-0-12-385075-1.00003-2. Methods Enzymol. 2011. PMID: 21601082
Using CisGenome to analyze ChIP-chip and ChIP-seq data.
Ji H, Jiang H, Ma W, Wong WH. Ji H, et al. Curr Protoc Bioinformatics. 2011 Mar;Chapter 2:Unit2.13. doi: 10.1002/0471250953.bi0213s33. Curr Protoc Bioinformatics. 2011. PMID: 21400695 Free PMC article.
Human transcriptome array for high-throughput clinical studies.
Xu W, Seok J, Mindrinos MN, Schweitzer AC, Jiang H, Wilhelmy J, Clark TA, Kapur K, Xing Y, Faham M, Storey JD, Moldawer LL, Maier RV, Tompkins RG, Wong WH, Davis RW, Xiao W; Inflammation and Host Response to Injury Large-Scale Collaborative Research Program. Xu W, et al. Proc Natl Acad Sci U S A. 2011 Mar 1;108(9):3707-12. doi: 10.1073/pnas.1019753108. Epub 2011 Feb 11. Proc Natl Acad Sci U S A. 2011. PMID: 21317363 Free PMC article.
Fast and accurate read alignment for resequencing.
Mu JC, Jiang H, Kiani A, Mohiyuddin M, Bani Asadi N, Wong WH. Mu JC, et al. Bioinformatics. 2012 Sep 15;28(18):2366-73. doi: 10.1093/bioinformatics/bts450. Epub 2012 Jul 18. Bioinformatics. 2012. PMID: 22811546 Free PMC article.
Widespread establishment and regulatory impact of Alu exons in human genes.
Shen S, Lin L, Cai JJ, Jiang P, Kenkel EJ, Stroik MR, Sato S, Davidson BL, Xing Y. Shen S, et al. Proc Natl Acad Sci U S A. 2011 Feb 15;108(7):2837-42. doi: 10.1073/pnas.1012834108. Epub 2011 Jan 31. Proc Natl Acad Sci U S A. 2011. PMID: 21282640 Free PMC article.
14 results