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Profiling mouse brown and white adipocytes to identify metabolically relevant small ORFs and functional microproteins.
Martinez TF, Lyons-Abbott S, Bookout AL, De Souza EV, Donaldson C, Vaughan JM, Lau C, Abramov A, Baquero AF, Baquero K, Friedrich D, Huard J, Davis R, Kim B, Koch T, Mercer AJ, Misquith A, Murray SA, Perry S, Pino LK, Sanford C, Simon A, Zhang Y, Zipp G, Bizarro CV, Shokhirev MN, Whittle AJ, Searle BC, MacCoss MJ, Saghatelian A, Barnes CA. Martinez TF, et al. Cell Metab. 2023 Jan 3;35(1):166-183.e11. doi: 10.1016/j.cmet.2022.12.004. Cell Metab. 2023. PMID: 36599300 Free PMC article.
Evaluating the Performance of the Astral Mass Analyzer for Quantitative Proteomics Using Data-Independent Acquisition.
Heil LR, Damoc E, Arrey TN, Pashkova A, Denisov E, Petzoldt J, Peterson AC, Hsu C, Searle BC, Shulman N, Riffle M, Connolly B, MacLean BX, Remes PM, Senko MW, Stewart HI, Hock C, Makarov AA, Hermanson D, Zabrouskov V, Wu CC, MacCoss MJ. Heil LR, et al. J Proteome Res. 2023 Oct 6;22(10):3290-3300. doi: 10.1021/acs.jproteome.3c00357. Epub 2023 Sep 8. J Proteome Res. 2023. PMID: 37683181 Free PMC article.
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments.
Gatto L, Aebersold R, Cox J, Demichev V, Derks J, Emmott E, Franks AM, Ivanov AR, Kelly RT, Khoury L, Leduc A, MacCoss MJ, Nemes P, Perlman DH, Petelski AA, Rose CM, Schoof EM, Van Eyk J, Vanderaa C, Yates JR 3rd, Slavov N. Gatto L, et al. Nat Methods. 2023 Mar;20(3):375-386. doi: 10.1038/s41592-023-01785-3. Epub 2023 Mar 2. Nat Methods. 2023. PMID: 36864200 Free PMC article. Review.
Targeted proteomics data interpretation with DeepMRM.
Park J, Wilkins C, Avtonomov D, Hong J, Back S, Kim H, Shulman N, MacLean BX, Lee SW, Kim S. Park J, et al. Cell Rep Methods. 2023 Jul 11;3(7):100521. doi: 10.1016/j.crmeth.2023.100521. eCollection 2023 Jul 24. Cell Rep Methods. 2023. PMID: 37533638 Free PMC article.
The metabolome as a biomarker of aging in Drosophila melanogaster.
Zhao X, Golic FT, Harrison BR, Manoj M, Hoffman EV, Simon N, Johnson R, MacCoss MJ, McIntyre LM, Promislow DEL. Zhao X, et al. Aging Cell. 2022 Feb;21(2):e13548. doi: 10.1111/acel.13548. Epub 2022 Jan 12. Aging Cell. 2022. PMID: 35019203 Free PMC article.
The ProteomeXchange consortium at 10 years: 2023 update.
Deutsch EW, Bandeira N, Perez-Riverol Y, Sharma V, Carver JJ, Mendoza L, Kundu DJ, Wang S, Bandla C, Kamatchinathan S, Hewapathirana S, Pullman BS, Wertz J, Sun Z, Kawano S, Okuda S, Watanabe Y, MacLean B, MacCoss MJ, Zhu Y, Ishihama Y, Vizcaíno JA. Deutsch EW, et al. Nucleic Acids Res. 2023 Jan 6;51(D1):D1539-D1548. doi: 10.1093/nar/gkac1040. Nucleic Acids Res. 2023. PMID: 36370099 Free PMC article.
28 results