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Efficient taxa identification using a pangenome index.
Ahmed O, Rossi M, Boucher C, Langmead B. Ahmed O, et al. Genome Res. 2023 Jul;33(7):1069-1077. doi: 10.1101/gr.277642.123. Epub 2023 May 31. Genome Res. 2023. PMID: 37258301 Free PMC article.
High-Throughput Prediction of MHC Class I and II Neoantigens with MHCnuggets.
Shao XM, Bhattacharya R, Huang J, Sivakumar IKA, Tokheim C, Zheng L, Hirsch D, Kaminow B, Omdahl A, Bonsack M, Riemer AB, Velculescu VE, Anagnostou V, Pagel KA, Karchin R. Shao XM, et al. Cancer Immunol Res. 2020 Mar;8(3):396-408. doi: 10.1158/2326-6066.CIR-19-0464. Epub 2019 Dec 23. Cancer Immunol Res. 2020. PMID: 31871119 Free PMC article.
Preprocedure Application of Machine Learning and Mechanistic Simulations Predicts Likelihood of Paroxysmal Atrial Fibrillation Recurrence Following Pulmonary Vein Isolation.
Shade JK, Ali RL, Basile D, Popescu D, Akhtar T, Marine JE, Spragg DD, Calkins H, Trayanova NA. Shade JK, et al. Circ Arrhythm Electrophysiol. 2020 Jul;13(7):e008213. doi: 10.1161/CIRCEP.119.008213. Epub 2020 Jun 14. Circ Arrhythm Electrophysiol. 2020. PMID: 32536204 Free PMC article.
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