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"Stripe" transcription factors provide accessibility to co-binding partners in mammalian genomes.
Zhao Y, Vartak SV, Conte A, Wang X, Garcia DA, Stevens E, Kyoung Jung S, Kieffer-Kwon KR, Vian L, Stodola T, Moris F, Chopp L, Preite S, Schwartzberg PL, Kulinski JM, Olivera A, Harly C, Bhandoola A, Heuston EF, Bodine DM, Urrutia R, Upadhyaya A, Weirauch MT, Hager G, Casellas R. Zhao Y, et al. Mol Cell. 2022 Sep 15;82(18):3398-3411.e11. doi: 10.1016/j.molcel.2022.06.029. Epub 2022 Jul 20. Mol Cell. 2022. PMID: 35863348 Free PMC article.
Global regulation of promoter melting in naive lymphocytes.
Kouzine F, Wojtowicz D, Yamane A, Resch W, Kieffer-Kwon KR, Bandle R, Nelson S, Nakahashi H, Awasthi P, Feigenbaum L, Menoni H, Hoeijmakers J, Vermeulen W, Ge H, Przytycka TM, Levens D, Casellas R. Kouzine F, et al. Cell. 2013 May 23;153(5):988-99. doi: 10.1016/j.cell.2013.04.033. Cell. 2013. PMID: 23706737 Free PMC article.
A genome-wide map of CTCF multivalency redefines the CTCF code.
Nakahashi H, Kieffer Kwon KR, Resch W, Vian L, Dose M, Stavreva D, Hakim O, Pruett N, Nelson S, Yamane A, Qian J, Dubois W, Welsh S, Phair RD, Pugh BF, Lobanenkov V, Hager GL, Casellas R. Nakahashi H, et al. Cell Rep. 2013 May 30;3(5):1678-1689. doi: 10.1016/j.celrep.2013.04.024. Epub 2013 May 23. Cell Rep. 2013. PMID: 23707059 Free PMC article.