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Bioframe: operations on genomic intervals in Pandas dataframes.
Open2C; Abdennur N, Fudenberg G, Flyamer IM, Galitsyna AA, Goloborodko A, Imakaev M, Venev S. Open2C, et al. Bioinformatics. 2024 Feb 1;40(2):btae088. doi: 10.1093/bioinformatics/btae088. Bioinformatics. 2024. PMID: 38402507 Free PMC article.
Cooltools: Enabling high-resolution Hi-C analysis in Python.
Open2C; Abdennur N, Abraham S, Fudenberg G, Flyamer IM, Galitsyna AA, Goloborodko A, Imakaev M, Oksuz BA, Venev SV, Xiao Y. Open2C, et al. PLoS Comput Biol. 2024 May 6;20(5):e1012067. doi: 10.1371/journal.pcbi.1012067. eCollection 2024 May. PLoS Comput Biol. 2024. PMID: 38709825 Free PMC article.
Pairtools: From sequencing data to chromosome contacts.
Open2C; Abdennur N, Fudenberg G, Flyamer IM, Galitsyna AA, Goloborodko A, Imakaev M, Venev SV. Open2C, et al. PLoS Comput Biol. 2024 May 29;20(5):e1012164. doi: 10.1371/journal.pcbi.1012164. eCollection 2024 May. PLoS Comput Biol. 2024. PMID: 38809952 Free PMC article.