Affinity modulation of small-molecule ligands by borrowing endogenous protein surfaces

Proc Natl Acad Sci U S A. 1999 Mar 2;96(5):1953-8. doi: 10.1073/pnas.96.5.1953.

Abstract

A general strategy is described for improving the binding properties of small-molecule ligands to protein targets. A bifunctional molecule is created by chemically linking a ligand of interest to another small molecule that binds tightly to a second protein. When the ligand of interest is presented to the target protein by the second protein, additional protein-protein interactions outside of the ligand-binding sites serve either to increase or decrease the affinity of the binding event. We have applied this approach to an intractable target, the SH2 domain, and demonstrate a 3-fold enhancement over the natural peptide. This approach provides a way to modulate the potency and specificity of biologically active compounds.

MeSH terms

  • Amino Acid Sequence
  • Binding Sites
  • Calorimetry
  • Cloning, Molecular
  • Escherichia coli
  • Humans
  • Immunophilins / chemistry*
  • Immunophilins / metabolism*
  • Kinetics
  • Ligands*
  • Macromolecular Substances
  • Models, Molecular
  • Peptides / chemical synthesis
  • Peptides / chemistry*
  • Protein Conformation
  • Recombinant Fusion Proteins / biosynthesis
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / metabolism
  • Surface Properties
  • Tacrolimus / metabolism*
  • Tacrolimus Binding Proteins

Substances

  • Ligands
  • Macromolecular Substances
  • Peptides
  • Recombinant Fusion Proteins
  • Recombinant Proteins
  • Tacrolimus Binding Proteins
  • Immunophilins
  • Tacrolimus