BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs

J D Thompson; F Plewniak; O Poch

doi:10.1093/bioinformatics/15.1.87

BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs

Bioinformatics. 1999 Jan;15(1):87-8. doi: 10.1093/bioinformatics/15.1.87.

Authors

J D Thompson¹, F Plewniak, O Poch

Affiliation

¹ Institut de Génétique et de Biologie Moleculaire et Cellulaire (CNRS/INSERM/ULP), BP 163, 67404 Illkirch Cedex, France. [email protected]

PMID: 10068696
DOI: 10.1093/bioinformatics/15.1.87

Abstract

Summary: BAliBASE is a database of manually refined multiple sequence alignments categorized by core blocks of conservation sequence length, similarity, and the presence of insertions and N/C-terminal extensions.

Availability: From http://www-igbmc. u-strasbg.fr/BioInfo/BAliBASE/index.html

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

Algorithms
Benchmarking
Data Display
Sequence Alignment*
Software*