Molecular-modeling calculations of enzymatic enantioselectivity taking hydration into account

Biotechnol Bioeng. 1998 Mar 20;57(6):741-5. doi: 10.1002/(sici)1097-0290(19980320)57:6<741::aid-bit11>3.0.co;2-a.

Abstract

A new molecular-modeling methodology has been applied to explain enzymatic enantioselectivity in water. This methodology, which combines vacuum molecular mechanics and the continuum solvation method, should provide a more realistic view of the solvent-enzyme and solvent-substrate interactions than the heretofore used approaches involving the vacuum molecular mechanics only. The methodology described herein has been validated using the experimental data on alpha-chymotrypsin's enantioselectivity in the hydrolysis of four chiral substrates. The reasons why the vacuum molecular mechanics, although not taking hydration into account, still in most cases provide a satisfactory approximation of reality are discussed.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Chymotrypsin / chemistry
  • Chymotrypsin / metabolism
  • Enzymes / chemistry*
  • Enzymes / metabolism*
  • Models, Molecular*
  • Protein Conformation
  • Stereoisomerism
  • Vacuum
  • Water

Substances

  • Enzymes
  • Water
  • Chymotrypsin