Molecular characterisation of a 5.75-kb cryptic plasmid from Bifidobacterium breve NCFB 2258 and determination of mode of replication

FEMS Microbiol Lett. 1999 May 15;174(2):285-94. doi: 10.1111/j.1574-6968.1999.tb13581.x.

Abstract

A small cryptic plasmid originating from Bifidobacterium breve NCFB 2258 was cloned and its complete nucleotide sequence determined. pCIBb1 is a circular DNA molecule, 5750 bp in size with a GC composition of 57%. Computer-assisted analysis identified 10 possible open reading frames (ORFs), seven of which could be assigned no function from homology searches. One ORF, rep (380 amino acids), was postulated to encode a replication protein similar to known replication proteins of rolling circle replicons, particularly those of the pC194 family. Demonstration of single-stranded forms of the plasmid in cell lysates that could be specifically degraded by S1 nuclease provided experimental evidence to substantiate a replication mechanism via single-stranded intermediates. Two other ORFs, par (199 amino acids) and an ftsK-like gene (286 amino acids), were assigned putative functions based on the presence of conserved motifs in their deduced proteins.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Bifidobacterium / genetics*
  • Cloning, Molecular
  • DNA Replication*
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • Humans
  • Molecular Sequence Data
  • Open Reading Frames
  • Plasmids / physiology*
  • Sequence Alignment
  • Sequence Analysis, DNA
  • Single-Strand Specific DNA and RNA Endonucleases / metabolism

Substances

  • DNA, Bacterial
  • Single-Strand Specific DNA and RNA Endonucleases

Associated data

  • GENBANK/AF085719