Internal electron transfer and structural dynamics of cd1 nitrite reductase revealed by laser CO photodissociation

Biochemistry. 1999 Jun 8;38(23):7556-64. doi: 10.1021/bi990179u.

Abstract

Laser photolysis techniques have been employed to investigate the internal electron transfer (eT) reaction within Pseudomonas aeruginosa nitrite reductase (Pa-NiR). We have measured the (d1--> c) internal eT rate for the wild-type protein and a site-directed mutant (Pa-NiR H327A) which has a substitution in the d1-heme binding pocket; we found the rate of eT to be fast, keT = 2.5 x 10(4) and 3.5 x 10(4) s-1 for the wild-type and mutant Pa-NiR, respectively. We also investigated the photodissociation of CO from the fully reduced proteins and observed microsecond first-order relaxations; these imply that upon breakage of the Fe2+-CO bond, both Pa-NiR and Pa-NiR H327A populate a nonequilibrium state which decays to the ground state with a complex time course that may be described by two exponential processes (k1 = 3 x 10(4) s-1 and k2 = 0.25 x 10(4) s-1). These relaxations do not have a kinetic difference spectrum characteristic of CO recombination, and therefore we conclude that Pa-NiR undergoes structural rearrangements upon dissociation of CO. The bimolecular rate of CO rebinding is 5 times faster in Pa-NiR H327A than in the wild-type enzyme (1.1 x 10(5) M-1 s-1 compared to 2 x 10(4) M-1 s-1), indicating that this mutation in the active site alters the CO diffusion properties of the protein, probably reducing steric hindrance. CO rebinding to the wild-type mixed valence enzyme (c3+d12+) which is very slow (k = 0.25 s-1) is proposed to be rate-limited by the c --> d1 internal eT event, involving the oxidized d1-heme which has a structure characteristic of the fully oxidized and partially oxidized Pa-NiR.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alanine / genetics
  • Binding Sites / genetics
  • Carbon Monoxide / chemistry*
  • Carbon Monoxide / metabolism
  • Cytochrome c Group
  • Cytochromes / chemistry*
  • Cytochromes / genetics
  • Cytochromes / metabolism
  • Electron Transport
  • Histidine / genetics
  • Kinetics
  • Lasers
  • Mutagenesis, Site-Directed
  • Nitrite Reductases / chemistry*
  • Nitrite Reductases / genetics
  • Nitrite Reductases / metabolism
  • Oxidation-Reduction
  • Photolysis
  • Pseudomonas aeruginosa / enzymology
  • Spectrophotometry
  • Thermodynamics
  • Titrimetry

Substances

  • Cytochrome c Group
  • Cytochromes
  • Histidine
  • Carbon Monoxide
  • cytochrome cd1
  • Nitrite Reductases
  • nitrite reductase, copper-containing
  • Alanine