Original reverse transcription polymerase chain reaction method to obtain the full-length cDNA of rice tungro spherical virus

J Virol Methods. 1999 May;79(2):161-8. doi: 10.1016/s0166-0934(99)00016-6.

Abstract

A two-step reverse transcription reaction combined with long PCR was developed in order to obtain the full-length cDNA from the 12.2 kbp genomic RNA of rice tungro spherical virus. A first step reverse transcription, performed at 45 degrees C using a reverse transcriptase deprived of RNase H activity, allowed the synthesis of a nearly full-length cDNA of 11.7 kbp. A second step reaction, carried out at 65 degrees C using a thermostable polymerase, was necessary to destabilise secondary structures present at the 5' extremity of the RNA template which hampered the reverse transcription reaction in this region. The full-length cDNA obtained by the two-step reverse transcription was amplified successfully by long PCR and subsequently cloned into a plasmid vector. The cloned cDNA showed toxicity and proved to be unstable when amplified in E. coli.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cloning, Molecular
  • DNA, Complementary
  • DNA, Viral / chemical synthesis*
  • Genetic Vectors
  • Oryza / virology*
  • Plasmids
  • RNA, Viral
  • Reverse Transcriptase Polymerase Chain Reaction / methods*
  • Sequivirus / genetics*

Substances

  • DNA, Complementary
  • DNA, Viral
  • RNA, Viral