Identification of nodulation promoter (nod-box) regions of Rhizobium galegae

FEMS Microbiol Lett. 1999 Aug 15;177(2):217-23. doi: 10.1111/j.1574-6968.1999.tb13735.x.

Abstract

A hybridisation analysis of a genomic clone library of Rhizobium galegae HAMBI 1174 located four EcoRI fragments homologous to the nod-box promoter sequence of Sinorhizobium meliloti in two separate gene regions. Two of the five nod-boxes detected in the R. galegae genome were carried on a single cosmid clone, pRg30, upstream from the nodABCIJ and nodF genes, whereas the other three nod-boxes were carried on a different cosmid clone, pRg10. Hybridisations with various nod gene probes from S. meliloti and Rhizobium leguminosarum species detected a nodD homolog in pRg10. The sequence data obtained from regions adjacent to each nod-box in pRg10 confirmed the presence of a second nodD in the R. galegae genome and, in addition, revealed the presence of nodN, nodU, dctA nifH and nifQ-like genes in pRg10. Thus, by using a promoter-specific nod-box probe we could identify a new region carrying genes involved in nitrogen fixation and host specificity functions.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Cosmids
  • Genes, Bacterial*
  • Molecular Sequence Data
  • Nitrogen Fixation
  • Plant Roots / microbiology*
  • Promoter Regions, Genetic*
  • Restriction Mapping
  • Rhizobium / genetics*
  • Sequence Analysis, DNA
  • Sequence Homology, Nucleic Acid
  • Symbiosis / genetics*

Associated data

  • GENBANK/AJ132912
  • GENBANK/AJ132913
  • GENBANK/Y08963