Structure of the human adenovirus serotype 2 fiber head domain at 1.5 A resolution

Virology. 1999 Sep 30;262(2):333-43. doi: 10.1006/viro.1999.9849.

Abstract

Adenovirus binds to its receptor via the head domain of its fiber protein. We have crystallized the adenovirus serotype 2 (subgroup C) receptor binding domain and solved the structure at 1.5 A resolution by the molecular replacement technique using the known adenovirus type 5 head structure. Included in the high-resolution model are 306 water molecules, five alternative side chain conformations, and individual anisotropic temperature factors for each atom. The overall structure of the serotype 2 head is very similar to its serotype 5 homologue, apart from differences in some of the flexible loops. All but subgroup B adenoviruses are believed to use the recently identified protein CAR (Coxsackievirus and adenovirus receptor) as receptor. By comparison of the two structures and sequence alignment of CAR binding and non-CAR binding serotype fiber heads, we discuss possible receptor binding sites and propose a receptor binding site in a crevice between two monomers on the side of the trimer. The structural basis of the extraordinary stability of the fiber head trimer is also discussed.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenoviruses, Human / chemistry*
  • Adenoviruses, Human / classification
  • Adenoviruses, Human / genetics
  • Amino Acid Sequence
  • Baculoviridae / genetics
  • Binding Sites
  • Capsid / chemistry*
  • Capsid / genetics
  • Capsid / isolation & purification
  • Capsid Proteins*
  • Crystallization
  • Crystallography, X-Ray
  • Electrons
  • Hydrogen Bonding
  • Models, Molecular
  • Molecular Sequence Data
  • Protein Binding
  • Protein Structure, Secondary
  • Receptors, Virus / metabolism
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / isolation & purification
  • Sequence Alignment
  • Temperature
  • Water

Substances

  • Capsid Proteins
  • Receptors, Virus
  • Recombinant Proteins
  • adenovirus receptor
  • hexon capsid protein, Adenovirus
  • Water

Associated data

  • PDB/1KNB