Modification of Cys-418 of pyruvate formate-lyase by methacrylic acid, based on its radical mechanism

FEBS Lett. 2000 Jan 21;466(1):45-8. doi: 10.1016/s0014-5793(99)01752-4.

Abstract

The recently determined crystal structure of pyruvate formate-lyase (PFL) suggested a new view of the mechanism of this glycyl radical enzyme, namely that intermediary thiyl radicals of Cys-418 and Cys-419 participate in different ways [Becker, A. et al. (1999) Nat. Struct. Biol. 6, 969-975]. We report here a suicide reaction of PFL that occurs with the substrate-analog methacrylate with retention of the protein radical (K(I)=0.42 mM, k(i)=0.14 min(-1)). Using [1-(14)C]methacrylate (synthesized via acetone cyanhydrin), the reaction end-product was identified by peptide mapping and cocrystallization experiments as S-(2-carboxy-(2S)-propyl) substituted Cys-418. The stereoselectivity of the observed Michael addition reaction is compatible with a radical mechanism that involves Cys-418 thiyl as nucleophile and Cys-419 as H-atom donor, thus supporting the functional assignments of these catalytic amino acid residues derived from the protein structure.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acetyltransferases / antagonists & inhibitors
  • Acetyltransferases / chemistry*
  • Acetyltransferases / metabolism*
  • Amino Acid Sequence
  • Amino Acid Substitution
  • Catalytic Domain
  • Cysteine / chemistry
  • Enzyme Inhibitors / pharmacology
  • Escherichia coli / enzymology
  • Free Radicals / chemistry
  • Kinetics
  • Methacrylates / pharmacology
  • Models, Chemical
  • Peptide Mapping
  • Recombinant Proteins / antagonists & inhibitors
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / metabolism

Substances

  • Enzyme Inhibitors
  • Free Radicals
  • Methacrylates
  • Recombinant Proteins
  • methacrylic acid
  • Acetyltransferases
  • formate C-acetyltransferase
  • Cysteine