Diversity within the VP4 gene of rotavirus P[8] strains: implications for reverse transcription-PCR genotyping

J Clin Microbiol. 2000 Feb;38(2):898-901. doi: 10.1128/JCM.38.2.898-901.2000.

Abstract

A degenerate version (1T1-D) of the rotavirus P[8]-specific primer (1T-1) allowed strains previously untypeable due to the accumulation of point mutations at the primer binding site to be P typed by reverse transcription-PCR. Sequencing of the cDNA followed by sequence alignment and phylogenetic analysis identified lineages and sublineages within the rotavirus P[8] types, while the use of 1T-1 or 1T-1D primers did not yield viral clusters in any particular lineage.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Capsid / genetics*
  • Capsid Proteins*
  • DNA Primers
  • Genes, Viral
  • Genetic Variation*
  • Genotype
  • Humans
  • Molecular Sequence Data
  • Reverse Transcriptase Polymerase Chain Reaction*
  • Rotavirus / classification*
  • Rotavirus / genetics*
  • Rotavirus Infections / virology

Substances

  • Capsid Proteins
  • DNA Primers
  • VP4 protein, Rotavirus