Due to the small amounts of sample gas involved in continuous flow mass spectrometric analysis, care should be taken to evaluate the influence of sample containers on the carbon and oxygen isotope ratios of samples. Data indicate that Na-glass and borosilicate glass vials, equipped with butyl rubber septa, can cause significant changes in the isotopic composition of CO(2) gas, even where sample gases are stored within the vial for less than one day. The magnitude of these changes varies from vial to vial. Given the leverage that contamination can potentially exert on small gas samples, each researcher should carefully evaluate the effect of sample vials in order to eliminate unknown and unwanted changes in the composition of samples. Copyright 2000 John Wiley & Sons, Ltd.