Using antibody catalysis to study the outcome of multiple evolutionary trials of a chemical task

Proc Natl Acad Sci U S A. 2000 Apr 11;97(8):3878-83. doi: 10.1073/pnas.97.8.3878.

Abstract

Catalytic aldolase antibodies generated by immunization with two different, but structurally related, beta-diketone haptens were cloned and sequenced to study similarities and differences between independently evolved catalysts. Kinetic and sequence analysis coupled with mutagenesis, structural, and modeling studies reveal that the defining event in the evolution of these catalysts was a somatic mutation that placed a lysine residue in a deep, yet otherwise unrefined, hydrophobic pocket. We suggest that covalent chemistries may be as readily selected from the immune repertoire as the traditional noncovalent interactions that have formed the basis of immunochemistry until this time. Further, we believe that these experiments recapitulate the defining events in the evolution of nature's enzymes, particularly as they relate to chemical mechanism, catalytic promiscuity, and gene duplication.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Antibodies, Catalytic / administration & dosage
  • Antibodies, Catalytic / genetics
  • Antibodies, Catalytic / metabolism*
  • Binding Sites
  • Cell Line
  • Cloning, Molecular
  • Evolution, Molecular*
  • Fructose-Bisphosphate Aldolase / immunology
  • Mice
  • Models, Molecular
  • Molecular Sequence Data
  • Mutagenesis, Site-Directed
  • Protein Conformation
  • Sequence Homology, Amino Acid

Substances

  • Antibodies, Catalytic
  • Fructose-Bisphosphate Aldolase

Associated data

  • GENBANK/AF242212
  • GENBANK/AF242213
  • GENBANK/AF242214
  • GENBANK/AF242215
  • GENBANK/AF242216
  • GENBANK/AF242217
  • GENBANK/AF242218
  • GENBANK/AF242219