Molecular characterization of Kaposi's sarcoma-associated herpesvirus/human herpesvirus-8 strains from Russia

J Gen Virol. 2000 May;81(Pt 5):1217-22. doi: 10.1099/0022-1317-81-5-1217.

Abstract

We report the molecular characterization, with subtyping of both K1 and K14.1/K15 genomic regions, of seven new human herpesvirus-8 (HHV-8) strains from Russian patients with classical Kaposi's sarcoma. Phylogenetic studies, based on the complete K1 gene/protein analysis, indicate that six of these strains belong to the A subtype, with one belonging to the A4 group and exhibiting a unique deletion of 19 amino acids in the VR2 region at position 186-204. PCR-based studies of the K14.1/K15 genomic region indicate that four of the new strains were of the M subtype while three belonged to the P subtype. Our study indicates an important genetic diversity of the HHV-8 strains currently present in Russia, including a new peculiar strain possessing a unique deletion in the VR2 segment, and confirms the absence of correlation between the K1 and K14.1/K15 molecular subtypes, as M and P genotypes can be observed in the A K1 subtype.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aged
  • Aged, 80 and over
  • Female
  • Genes, Viral
  • Genetic Variation*
  • Herpesvirus 8, Human / classification*
  • Herpesvirus 8, Human / genetics*
  • Humans
  • Male
  • Molecular Epidemiology
  • Molecular Sequence Data
  • Open Reading Frames / genetics
  • Phylogeny
  • Polymerase Chain Reaction
  • Russia / epidemiology
  • Sarcoma, Kaposi / epidemiology*
  • Sarcoma, Kaposi / virology*
  • Sequence Deletion

Associated data

  • GENBANK/AF201847
  • GENBANK/AF201848
  • GENBANK/AF201849
  • GENBANK/AF201850
  • GENBANK/AF201851
  • GENBANK/AF201852
  • GENBANK/AF201853