Sequence-specific DNA recognition by the Myb-like domain of plant telomeric protein RTBP1

J Biol Chem. 2000 Aug 4;275(31):24208-14. doi: 10.1074/jbc.M003250200.

Abstract

We have identified a rice gene encoding a DNA-binding protein that specifically recognizes the telomeric repeat sequence TTTAGGG found in plants. This gene, which we refer to as RTBP1 (rice telomere-binding protein 1), encodes a polypeptide with a predicted molecular mass of 70 kDa. RTBP1 is ubiquitously expressed in various organs and binds DNA with two or more duplex TTTAGGG repeats. The predicted protein sequence includes a single domain at the C terminus with extensive homology to Myb-like DNA binding motif. The Myb-like domain of RTBP1 is very closely related to that of other telomere-binding proteins, including TRF1, TRF2, Taz1p, and Tbf1p, indicating that DNA-binding domains of telomere-binding proteins are well conserved among evolutionarily distant species. To obtain precise information on the sequence of the DNA binding site recognized by RTBP1, we analyzed the sequence-specific binding properties of the isolated Myb-like domain of RTBP1. The isolated Myb-like domain was capable of sequence-specific DNA binding as a homodimer. Gel retardation analysis with a series of mutated telomere probes revealed that the internal GGGTTT sequence in the two-telomere repeats is critical for binding of Myb-like domain of RTBP1, which is consistent with the model of the TRF1.DNA complex showing that base-specific contacts are made within the sequence GGGTTA. To the best of our knowledge, RTBP1 is the first cloned gene in which the product is able to bind double-stranded telomeric DNA in plants. Because the Myb-like domain appears to be a significant motif for a large class of proteins that bind the duplex telomeric DNA, RTBP1 may play important roles in plant telomere function in vivo.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Binding Sites
  • Cloning, Molecular
  • Conserved Sequence
  • DNA-Binding Proteins / genetics
  • DNA-Binding Proteins / metabolism*
  • Gene Dosage
  • Gene Library
  • Genes, Plant
  • Molecular Sequence Data
  • Oryza / genetics*
  • Peptide Fragments / metabolism
  • Plant Proteins / genetics
  • Protein Binding
  • Proto-Oncogene Proteins c-myb*
  • Repetitive Sequences, Nucleic Acid
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid
  • Telomere-Binding Proteins*
  • Telomeric Repeat Binding Protein 1

Substances

  • DNA-Binding Proteins
  • Peptide Fragments
  • Plant Proteins
  • Proto-Oncogene Proteins c-myb
  • Telomere-Binding Proteins
  • Telomeric Repeat Binding Protein 1
  • telomere binding protein-1, Oryza sativa

Associated data

  • GENBANK/AF242298