Solution structure of ZipA, a crucial component of Escherichia coli cell division

Biochemistry. 2000 Aug 8;39(31):9146-56. doi: 10.1021/bi0009690.

Abstract

ZipA, an essential component of cell division in Escherichia coli, interacts with the FtsZ protein at the midcell in one of the initial steps of septum formation. The high-resolution solution structure of the 144-residue C-terminal domain of E. coli ZipA (ZipA(185)(-)(328)) has been determined by multidimensional heteronuclear NMR. A total of 30 structures were calculated by means of hybrid distance geometry-simulated annealing using a total of 2758 experimental NMR restraints. The atomic root means square distribution about the mean coordinate positions for residues 6-142 for the 30 structures is 0.37 +/- 0.04 A for the backbone atoms, 0. 78 +/- 0.05 A for all atoms, and 0.45 +/- 0.04 A for all atoms excluding disordered side chains. The NMR solution structure of ZipA(185)(-)(328) is composed of three alpha-helices and a beta-sheet consisting of six antiparallel beta-strands where the alpha-helices and the beta-sheet form surfaces directly opposite each other. A C-terminal peptide from FtsZ has been shown to bind ZipA(185)(-)(328) in a hydrophobic channel formed by the beta-sheet providing insight into the ZipA-FtsZ interaction. An unexpected similarity between the ZipA(185)(-)(328) fold and the split beta-alpha-beta fold observed in many RNA binding proteins may further our understanding of the critical ZipA-FtsZ interaction.

MeSH terms

  • Amino Acid Sequence
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / physiology
  • Carrier Proteins / chemistry*
  • Carrier Proteins / physiology
  • Cell Cycle Proteins / chemistry*
  • Cell Cycle Proteins / physiology
  • Cell Division
  • Computer Simulation
  • Crystallography, X-Ray
  • Cytoskeletal Proteins*
  • Escherichia coli / chemistry*
  • Escherichia coli / cytology*
  • Escherichia coli / physiology
  • Escherichia coli Proteins*
  • Models, Molecular
  • Molecular Sequence Data
  • Nuclear Magnetic Resonance, Biomolecular
  • Peptide Fragments / chemistry
  • Protein Folding
  • Protein Structure, Secondary
  • RNA-Binding Proteins / chemistry
  • Solutions

Substances

  • Bacterial Proteins
  • Carrier Proteins
  • Cell Cycle Proteins
  • Cytoskeletal Proteins
  • Escherichia coli Proteins
  • FtsZ protein, Bacteria
  • Peptide Fragments
  • RNA-Binding Proteins
  • Solutions
  • ZipA protein, E coli

Associated data

  • PDB/1F7W
  • PDB/1F7X