Two DNA polymerases of Escherichia coli display distinct misinsertion specificities for 2-hydroxy-dATP during DNA synthesis

Biochemistry. 2000 Aug 8;39(31):9508-13. doi: 10.1021/bi000683v.

Abstract

The insertion specificities of an oxidized dATP analogue, 2-hydroxydeoxyadenosine 5'-triphosphate (2-OH-dATP), were determined using the alpha (catalytic) subunit of Escherichia coli DNA polymerase III and the exonuclease-deficient Klenow fragment of DNA polymerase I. In contrast to our previous observation that mammalian DNA polymerase alpha incorporated the oxidized nucleotide opposite T and C, these two E. coli DNA polymerases incorporated 2-OH-dATP opposite T and G on the DNA template. Steady-state kinetic studies indicated that the alpha subunit incorporated 2-OH-dATP 10 times more frequently opposite T than opposite G. On the other hand, the incorporation of 2-OH-dATP opposite T by the exonuclease-deficient Klenow fragment was 2 orders of magnitude more efficient than that opposite G. These results indicate that the misinsertion specificity of 2-OH-dATP differs between replicative and repair-type DNA polymerases, and provide a biochemical basis for the mutations induced by 2-OH-dATP in E. coli.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Triphosphate / analogs & derivatives*
  • Adenosine Triphosphate / metabolism*
  • Catalysis
  • DNA Polymerase I / genetics
  • DNA Polymerase I / metabolism*
  • DNA Polymerase III / metabolism*
  • DNA Replication*
  • Escherichia coli / enzymology*
  • Escherichia coli / genetics
  • Exodeoxyribonucleases / deficiency
  • Exodeoxyribonucleases / genetics
  • Kinetics
  • Reactive Oxygen Species / metabolism
  • Substrate Specificity / genetics

Substances

  • 2-hydroxydeoxyadenosine triphosphate
  • Reactive Oxygen Species
  • Adenosine Triphosphate
  • DNA Polymerase I
  • DNA Polymerase III
  • Exodeoxyribonucleases