An apparent interlocus gene conversion-like event at a putative tumor suppressor gene locus on human chromosome 6q27 in a Burkitt's lymphoma cell line

DNA Res. 2000 Aug 31;7(4):261-72. doi: 10.1093/dnares/7.4.261.

Abstract

A region of minimal deletion in B-cell non-Hodgkin's lymphoma (B-NHL) has recently been defined between D6S186 and D6S227 spanning 5-9 Mb at 6q26-q27, predicting the presence of at least one tumor suppressor gene (TSG) at this locus. During the construction of a deletion map in the B-NHL tumor panel, we report the identification of a Burkitt's lymphoma cell line, BL74, having an apparent homozygous deletion at the D6S347 locus, internal to the critical region. Since this case may facilitate the localization of the target TSG, a detailed structural molecular characterization and search for candidate genes were undertaken at this locus. While BL74 underwent a loss of heterozygosity at 6q26-q27, D6S347 was also likely subjected to a somatic interlocus gene conversion-like event between two homologous but distinct loci, resulting in the homozygous replacement of a 1860- to 2067-bp segment of one locus with the corresponding segment copied from the other locus. Two genes at this locus were identified, but their lack of expression in B-cell lineages tentatively excludes them as candidate TSGs. Another still unidentified gene at this locus may be disrupted by the gene conversion-like event, which would represent a novel mechanism of TSG inactivation.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Alleles
  • Base Sequence
  • Blotting, Northern
  • Blotting, Southern
  • Burkitt Lymphoma / genetics*
  • Chromosome Mapping
  • Chromosomes, Human, Pair 6 / genetics*
  • Electrophoresis, Gel, Pulsed-Field
  • Exons
  • Gene Conversion
  • Gene Deletion
  • Genes, Tumor Suppressor / genetics*
  • Humans
  • Loss of Heterozygosity
  • Models, Genetic
  • Molecular Sequence Data
  • Polymorphism, Restriction Fragment Length
  • RNA / metabolism
  • Sequence Analysis, DNA
  • Sequence Homology, Nucleic Acid
  • Transcription, Genetic
  • Tumor Cells, Cultured

Substances

  • RNA