Identification of a genetic subcluster of HIV type 1 subtype C (C') widespread in Ethiopia

AIDS Res Hum Retroviruses. 2000 Nov 20;16(17):1909-14. doi: 10.1089/08892220050195865.

Abstract

Others and we have previously shown that subtype C is the predominant HIV-1 subtype and the major cause of AIDS in Ethiopia. The present study shows that subtype C in Ethiopia has a genetic subcluster, designated C', has not increased in frequency, or spread geographically, over the period 1988 (%C' = 23/53) to 1996-1997 (%C' = 26/50). There is no association of the HIV-1 subtype C or subcluster C' with geographic location, time of sample collection, or risk group in Ethiopia. Of 105 randomly collected samples representing 7 different towns in Ethiopia, all but 2 (1 subtype A from Addis Ababa, 1997 and 1 subtype D from Dessie, 1996) belong to subtype C.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Ethiopia / epidemiology
  • HIV Envelope Protein gp120 / immunology
  • HIV Infections / epidemiology*
  • HIV Infections / virology*
  • HIV-1 / classification*
  • HIV-1 / genetics*
  • Humans
  • Molecular Sequence Data
  • Peptide Fragments / immunology
  • Phylogeny
  • Sequence Analysis, DNA

Substances

  • HIV Envelope Protein gp120
  • HIV envelope protein gp120 (305-321)
  • Peptide Fragments