RNA polymerase--promoter recognition. Specific features of electrostatic potential of "early" T4 phage DNA promoters

J Biomol Struct Dyn. 2000 Dec;18(3):325-34. doi: 10.1080/07391102.2000.10506669.

Abstract

Comparative analysis of electrostatic potential distribution for "early" T4 phage promoters was undertaken, along with calculation of topography of electrostatic potential around the native and ADP-ribosylated C-terminal domain of RNA polymerase alpha-subunit. The data obtained indicate that there is specific difference in the patterns of electrostatic potential distribution in far upstream regions of T4 promoters differing by their response to ADP-ribosylation of RNA polymerase. A specific change in profiles of electrostatic potential distribution for the native and ADP-ribosylated forms of RNA polymerase alpha-subunit was observed suggesting that this factor may be responsible for modulating T4 promoter activities in response to the enzyme modification.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Diphosphate Ribose / chemistry
  • Adenosine Diphosphate Ribose / metabolism
  • Bacteriophage T4 / genetics*
  • Base Sequence
  • DNA, Viral / chemistry*
  • DNA, Viral / genetics*
  • DNA, Viral / metabolism
  • DNA-Directed RNA Polymerases / chemistry*
  • DNA-Directed RNA Polymerases / metabolism*
  • Escherichia coli / enzymology
  • Escherichia coli / genetics
  • Models, Molecular
  • Molecular Sequence Data
  • Promoter Regions, Genetic*
  • Protein Conformation
  • Static Electricity

Substances

  • DNA, Viral
  • Adenosine Diphosphate Ribose
  • DNA-Directed RNA Polymerases
  • RNA polymerase alpha subunit